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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  FITTING OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE DOMAINS INTO THE 15 A CRYO-EM MAP OF A HCV IRES-80S RIBOSOME (H. SAPIENS) COMPLEX
 
Authors :  D. Boehringer, R. Thermann, A. Ostareck-Lederer, J. D. Lewis, H. Stark
Date :  27 Jul 05  (Deposition) - 25 Jul 06  (Release) - 18 Dec 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  15.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Hcv, Ires, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Boehringer, R. Thermann, A. Ostareck-Lederer, J. D. Lewis, H. Star
Structure Of The Hepatitis C Virus Ires Bound To The Human 80S Ribosome: Remodeling Of The Hcv Ires
Structure V. 13 1695 2005
PubMed-ID: 16271893  |  Reference-DOI: 10.1016/J.STR.2005.08.008

(-) Compounds

Molecule 1 - HCV-1B IRES RNA SUB-DOMAIN IIID
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - HCV IRES SUB-DOMAIN IIIB
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - HCV IRES DOMAIN II
    Chains: C
    Engineered: YES
    Synthetic: YES
 
Molecule 4 - 6 NT A-RNA HELIX
    Chains: D
    Engineered: YES
    Synthetic: YES
 
Molecule 5 - HCV IRES IIIABC
    Chains: E
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:28
                                                           
                  2agn A  2 GCCGAGUAGUGUUGGGUCGCGAAAGGCC 29
                                    11        21        


Chain B from PDB  Type:RNA  Length:25
                                                        
                  2agn B  2 GCGCUCAAUGCUCGAGACGACCGCC 30
                                    11  ||    25     
                                       14|           
                                        19           


Chain C from PDB  Type:RNA  Length:76
                                                                                                           
                  2agn C  2 GCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC 77
                                    11        21        31        41        51        61        71      


Chain D from PDB  Type:DNA  Length:14
                                             
                  2agn D  2 CCCGGGGCCCGGGG 15
                                    11    


Chain E from PDB  Type:RNA  Length:40
                                                                       
                  2agn E  2 GCGGAACCGACACCGGAAUCCGGAUUUGGGCGGCCCCCGC 52
                                    17        27||      41 ||     52
                                   10|         28|        43|       
                                    17          33         45
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