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Sequence, Chains, Asymmetric and Biological Units

Title FITTING OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE DO THE 15 A CRYO-EM MAP OF A HCV IRES-80S RIBOSOME (H. SAPIENS
Keywords HCV, IRES, RNA
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2AGN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 28 28 0
2  DNA    B 25 25 0
3  DNA    C 76 76 0
4  DNA    D 14 14 0
5  DNA    E 40 40 0
total       183 183 0

Nucleic acids
Unit 1 G2 C3 C4 G5 A6 G7 U8 A9 G10 U11 G12 U13 U14 G15 G16 G17 U18 C19 G20 C21 G22 A23 A24 A25 G26 G27 C28 C29
Unit 2 G2 C3 G4 C5 U6 C7 A8 A9 U10 G11 C12 U13 C14 G19 A20 G21 A22 C23 G24 A25 C26 C27 G28 C29 C30
Unit 3 G2 C3 U4 G5 U6 G7 A8 G9 G10 A11 A12 C13 U14 A15 C16 U17 G18 U19 C20 U21 U22 C23 A24 C25 G26 C27 A28 G29 A30 A31 A32 G33 C34 G35 U36 C37 U38 A39 G40 C41 C42 A43 U44 G45 G46 C47 G48 U49 U50 A51 G52 U53 A54 U55 G56 A57 G58 U59 G60 U61 C62 G63 U64 G65 C66 A67 G68 C69 C70 U71 C72 C73 A74 G75 C76 C77
Unit 4 C2 C3 C4 G5 G6 G7 G8 C9 C10 C11 G12 G13 G14 G15
Unit 5 G2 C3 G4 G5 A6 A7 C8 C9 G10 A17 C18 A19 C20 C21 G22 G23 A24 A25 U26 C27 C28 G33 G34 A35 U36 U37 U38 G39 G40 G41 C42 G43 G45 C46 C47 C48 C49 C50 G51 C52

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany