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(-) Description

Title :  MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE
 
Authors :  Q. Zhao, F. Zhao, K. F. Blount, Q. Han, Y. Tor, T. Hermann
Date :  07 Jun 05  (Deposition) - 20 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Ribosome, Rna, A-Site. Double Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Zhao, Q. Zhao, K. F. Blount, Q. Han, Y. Tor, T. Hermann
Molecular Recognition Of Rna By Neomycin And A Restricted Neomycin Derivative
Angew. Chem. Int. Ed. Engl. V. 44 5329 2005
PubMed-ID: 16037995  |  Reference-DOI: 10.1002/ANIE.200500903
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'
    Chains: A, C, E, G
    Engineered: YES
    Fragment: RIBOSOMAL RNA A-SITE
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN ESCHERICHIA COLI (BACTERIA) EXCEPT ONE RESIDUE WAS REMOVED NEAR 3' TERMINAL
    Synthetic: YES
 
Molecule 2 - 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)- 3'
    Chains: B, D, F, H
    Engineered: YES
    Fragment: RIBOSOMAL RNA A-SITE
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN ESCHERICHIA COLI (BACTERI)A EXCEPT ONE RESIDUE WAS REMOVED NEAR 5' TERMINAL
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZX7)

(-) Sites  (0, 0)

(no "Site" information available for 1ZX7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZX7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZX7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZX7)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZX7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:15
                                              
                  1zx7 A  2 GUGGUGAAGUCGCGG 16
                                    11     


Chain B from PDB  Type:RNA  Length:14
                                             
                  1zx7 B 21 CGCGUCACACCACC 34
                                    30    


Chain C from PDB  Type:RNA  Length:15
                                              
                  1zx7 C  2 GUGGUGAAGUCGCGG 16
                                    11     


Chain D from PDB  Type:RNA  Length:14
                                             
                  1zx7 D 21 CGCGUCACACCACC 34
                                    30    


Chain E from PDB  Type:RNA  Length:15
                                              
                  1zx7 E  2 GUGGUGAAGUCGCGG 16
                                    11     


Chain F from PDB  Type:RNA  Length:14
                                             
                  1zx7 F 21 CGCGUCACACCACC 34
                                    30    


Chain G from PDB  Type:RNA  Length:15
                                              
                  1zx7 G  2 GUGGUGAAGUCGCGG 16
                                    11     


Chain H from PDB  Type:RNA  Length:14
                                             
                  1zx7 H 21 CGCGUCACACCACC 34
                                    30
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZX7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZX7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZX7)

(-) Gene Ontology  (0, 0)

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  1zx7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1zz5