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Sequence, Chains, Asymmetric and Biological Units

Title MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE
Keywords RIBOSOME, RNA, A-SITE. DOUBLE HELIX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1ZX7     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 15 325 0
2  RNA    B 14 289 0
3  RNA    C 15 325 0
4  RNA    D 14 289 0
5  RNA    E 15 325 0
6  RNA    F 14 289 0
7  RNA    G 15 325 0
8  RNA    H 14 289 0
9 Water     91 0 92
total       207 2456 92

Nucleic acids
Unit 1 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 2 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34
Unit 3 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 4 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34
Unit 5 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 6 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34
Unit 7 G2 U3 G4 G5 U6 G7 A8 A9 G10 U11 C12 G13 C14 G15 G16
Unit 8 C21 G22 C23 G24 U25 C26 A27 C28 A29 C30 C31 A32 C33 C34

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany