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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA
 
Authors :  S. Shandrick, Q. Zhao, Q. Han, B. K. Ayida, M. Takahashi, G. C. Winters, K. B. Simonsen, D. Vourloumis, T. Hermann
Date :  08 Apr 04  (Deposition) - 15 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Crystal Structure, 2-Aminopurine, Bacterial Decoding Site Rna, Fluorescence Emission Spectra, 9-Beta-D-Ribofuranosyl- 9H-Purin-2-Amine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shandrick, Q. Zhao, Q. Han, B. K. Ayida, M. Takahashi, G. C. Winters, K. B. Simonsen, D. Vourloumis, T. Hermann
Monitoring Molecular Recognition Of The Ribosomal Decoding Site.
Angew. Chem. Int. Ed. Engl. V. 43 3177 2004
PubMed-ID: 15199571  |  Reference-DOI: 10.1002/ANIE.200454217
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*GP*GP*UP*GP*GP*UP*GP*(MTU) P*AP*GP*UP*CP*GP*CP*UP*GP*G)-3'
    Chains: A, C
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'- R(*CP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
    Chains: B, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MTU2Mod. Nucleotide9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MTU1Mod. Nucleotide9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MTU1Mod. Nucleotide9-BETA-D-RIBOFURANOSYL-9H-PURIN-2-AMINE

(-) Sites  (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:RNA  Length:17
                                                
                  1t0d A  1 GGUGGUGaAGUCGCUGG 17
                                   |10       
                                   8-MTU     


Chain B from PDB  Type:RNA  Length:16
                                               
                  1t0d B 20 CAGCGUCACACCACCC 35
                                    29      


Chain C from PDB  Type:RNA  Length:17
                                                
                  1t0d C  1 GGUGGUGaAGUCGCUGG 17
                                   |10       
                                   8-MTU     


Chain D from PDB  Type:RNA  Length:16
                                               
                  1t0d D 20 CAGCGUCACACCACCC 35
                                    29
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1t0e