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(-) Description

Title :  DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA, THEORETICAL MODEL
 
Authors :  V. M. Marathias, K. Y. Wang, S. Kumar, S. Swaminathan, P. H. Bolton
Date :  11 Apr 96  (Deposition) - 08 Nov 96  (Release) - 08 Nov 96  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,_#
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Qudraplex Dna, Thrombin Inhibitor, Mn Binding Dna, Telomere Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. M. Marathias, K. Y. Wang, S. Kumar, T. Q. Pham, S. Swaminathan, P. H. Bolton
Determination Of The Number And Location Of The Manganese Binding Sites Of Dna Quadruplexes In Solution By Epr And Nmr In The Presence And Absence Of Thrombin.
J. Mol. Biol. V. 260 378 1996
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA APTAMER (15MER, D(GGTTGGTGTGGTTGG))
    Chains: A
    Engineered: YES
    Other Details: PREDICTED STRUCTURE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Theoretical Model (1, 2)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (0, 0)

(no "Site" information available for 1QDG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QDG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QDG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QDG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QDG)

(-) Exons   (0, 0)

(no "Exon" information available for 1QDG)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:15
                                              
                  1qdg A  1 GGTTGGTGTGGTTGG 15
                                    10
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1QDG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1QDG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1QDG)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
    (no "Gene Ontology" information available for 1QDG)

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 Related Entries

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