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(-) Description

Title :  A THREE-DIMENSIONAL MODEL FOR NODULE DNA
 
Authors :  D. Sprous, S. C. Harvey
Date :  24 Apr 92  (Deposition) - 15 Jul 93  (Release) - 15 Oct 94  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Sprous, S. C. Harvey
A Three-Dimensional Model For Nodule Dna.
J. Biol. Chem. V. 267 5502 1992
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (47-MER)
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (47-MER)
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1D71)

(-) Sites  (0, 0)

(no "Site" information available for 1D71)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1D71)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1D71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1D71)

(-) Exons   (0, 0)

(no "Exon" information available for 1D71)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:47
                                                                              
                  1d71 A  1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 47
                                    10        20        30        40       


Chain B from PDB  Type:DNA  Length:47
                                                                              
                  1d71 B 94 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 48
                            ||||||||85||||||||75||||||||65||||||||55|||||||
                           94|||||||85|||||||76|||||||67|||||||58|||||||49|
                            93|||||||84|||||||75|||||||66|||||||57|||||||48
                             92|||||| 83|||||| 74|||||| 65|||||| 56||||||  
                              91|||||  82|||||  73|||||  64|||||  55|||||  
                               90||||   81||||   72||||   63||||   54||||  
                                89|||    80|||    71|||    62|||    53|||  
                                 88||     79||     70||     61||     52||  
                                  87|      78|      69|      60|      51|  
                                   86       77       68       59       50
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1D71)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1D71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1D71)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
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  1d71
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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