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Sequence, Chains, Asymmetric and Biological Units

Title A THREE-DIMENSIONAL MODEL FOR NODULE DNA
Keywords DNA
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1D71     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 47 1007 0
2  DNA    B 47 912 0
total       94 1919 0

Nucleic acids
Unit 1 G1 A2 G3 A4 G5 A6 G7 A8 G9 A10 G11 A12 G13 A14 G15 A16 G17 A18 G19 A20 G21 A22 G23 A24 G25 A26 G27 A28 G29 A30 G31 A32 G33 A34 G35 A36 G37 A38 G39 A40 G41 A42 G43 A44 G45 A46 G47
Unit 2 C48 T49 C50 T51 C52 T53 C54 T55 C56 T57 C58 T59 C60 T61 C62 T63 C64 T65 C66 T67 C68 T69 C70 T71 C72 T73 C74 T75 C76 T77 C78 T79 C80 T81 C82 T83 C84 T85 C86 T87 C88 T89 C90 T91 C92 T93 C94

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany