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(-) Description

Title :  DE NOVO DESIGNED PROTEIN MODEL OF RADICAL ENZYMES
 
Authors :  Q. -H. Dai, C. Tommos, E. J. Fuentes, M. Blomberg, P. L. Dutton, A. J. Wand
Date :  09 May 02  (Deposition) - 05 Jun 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (16x)
Keywords :  Three Helix Bundle, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. -H. Dai, C. Tommos, E. J. Fuentes, M. Blomberg, P. L. Dutton, A. J. Wand
Structure Of A De Novo Designed Protein Model Of Radical Enzymes
J. Am. Chem. Soc. V. 124 10952 2002
PubMed-ID: 12224922  |  Reference-DOI: 10.1021/JA0264201
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALPHA3W
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32
    Expression System Strain: DH5ALPHA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Other Details: PROTEIN MODEL FOR TRYPTOPHANYL RADICAL
    Other Details - Source: DE NOVO DESIGN/SYNTHETIC GENE: GENE GENERATED USING OVERLAPPING PCR METHOD FROM SYNTHETIC OLIGOS

 Structural Features

(-) Chains, Units

  
NMR Structure (16x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LQ7)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LQ7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LQ7)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1LQ7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains d1lq7a_ A: Alpha3W                                                  SCOP domains
               CATH domains 1lq7A00 A:1-67 Designed single chain three-helix bundle             CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1lq7 A  1 GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67
                                    10        20        30        40        50        60
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Designed proteins (167)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1LQ7)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1LQ7)

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