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(-) Description

Title :  PRECURSOR OF THE W11F MUTANT GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM MENINGOSEPTICUM
 
Authors :  H. -C. Guo, Q. Xu
Date :  15 Jun 99  (Deposition) - 16 Jun 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Precursor, Glycosylasparaginase, N-Terminal Nucleophile, Autoproteolysis, Mutant, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Xu, D. Buckley, C. Guan, H. C. Guo
Structural Insights Into The Mechanism Of Intramolecular Proteolysis.
Cell(Cambridge, Mass. ) V. 98 651 1999
PubMed-ID: 10490104  |  Reference-DOI: 10.1016/S0092-8674(00)80052-5

(-) Compounds

Molecule 1 - PROTEIN (GLYCOSYLASPARAGINASE)
    Chains: A, C
    EC Number: 3.5.1.26
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL FUSION PROTEIN
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: ELIZABETHKINGIA MENINGOSEPTICA
    Organism Taxid: 238
    Other Details: AN INHIBITOR (FREE GLYCINE) IS BOUND TO EACH PRECURSOR
    Other Details - Source: RECOMBINANT PROTEIN
    Synonym: GLYCOASPARAGINASE,ASPARTYLGLYCOSYLAMINASE, ASPARTYLGLUCOSAMINIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GLY2Mod. Amino AcidGLYCINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:152 , THR A:170 , GLY A:172 , ARG A:180 , ASP A:183 , SER A:184 , GLY A:204 , GLY A:206 , HOH A:660BINDING SITE FOR RESIDUE GLY A 296
2AC2SOFTWARETHR C:452 , THR C:470 , GLY C:472 , ARG C:480 , ASP C:483 , SER C:484 , GLY C:504 , GLY C:506 , HOH C:625 , HOH C:626BINDING SITE FOR RESIDUE GLY C 596
3CATAUTHORTHR A:152 , THR C:452CATALYTIC SITE, MUTATED (W11F)
4INHAUTHORARG A:180 , ARG C:480INHIBITOR/GLYCINE BINDING SITE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 9GAF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:4 -Pro A:5
2Lys C:304 -Pro C:305

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 9GAF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 9GAF)

(-) Exons   (0, 0)

(no "Exon" information available for 9GAF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d9gafa_ A: Glycosylasparaginase (aspartylglucosaminidase, AGA)                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhh...........eeeee.....eeeee.......hhhhhhhhhhh....eeehhhhhhhhhhh.........hhhhhhhhhh.............eeeeee.....eeeeeee....................eeee...eeeeeee.hhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhh..eeeeeee....eeeee......eeeee..eeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 9gaf A   2 TNKPIVLSTFNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLYKPIVNIENHDTIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKGNRLETPGFALKG 296
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    || 145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295|
                                                                                                                                                                136|                                                                                                                                                       295|
                                                                                                                                                                 141                                                                                                                                                        296


Chain C from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d9gafc_ C: Glycosylasparaginase (aspartylglucosaminidase, AGA)                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......................eeeee.....eeee........hhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhh.............eeeeee.....eeeeeee....................eeee...eeeeeee.hhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhh..eeeeeee....eeeee.....eeeeee..eeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 9gaf C 301 TTNKPIVLSTFNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLKYKPIVNIENHDTIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKGNRLETPGFALKG 596
                                   310       320       330       340       350       360       370       380       390       400       410       420       430      |443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593 ||
                                                                                                                                                                  437|                                                                                                                                                       595|
                                                                                                                                                                   441                                                                                                                                                        596
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 9GAF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 9GAF)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASPG_ELIMR | Q47898: 1ayy 1p4k 1p4v 2gac 2gaw 2gl9 3ljq 4r4y 9gaa 9gac

(-) Related Entries Specified in the PDB File

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