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(-) Description

Title :  7-FE FERREDOXIN FROM AZOTOBACTER VINELANDII AT PH 8.5, 100 K, 1.35 A
 
Authors :  C. D. Stout, E. A. Stura, D. E. Mcree
Date :  11 Dec 98  (Deposition) - 16 Dec 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Electron Transport, Iron-Sulfur (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. G. Schipke, D. B. Goodin, D. E. Mcree, C. D. Stout
Oxidized And Reduced Azotobacter Vinelandii Ferredoxin I At 1. 4 A Resolution: Conformational Change Of Surface Residues Without Significant Change In The [3Fe-4S]+/0 Cluster.
Biochemistry V. 38 8228 1999
PubMed-ID: 10387068  |  Reference-DOI: 10.1021/BI983008I
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (7-FE FERREDOXIN I)
    Chains: A
    Organism Scientific: AZOTOBACTER VINELANDII
    Organism Taxid: 354
    Synonym: FD1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2SF41Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:2 , CYS A:20 , VAL A:22 , CYS A:24 , PHE A:25 , CYS A:39 , ILE A:40 , CYS A:42 , ALA A:43 , CYS A:45BINDING SITE FOR RESIDUE SF4 A 107
2AC2SOFTWAREVAL A:4 , CYS A:8 , LYS A:12 , TYR A:13 , THR A:14 , ASP A:15 , CYS A:16 , CYS A:49BINDING SITE FOR RESIDUE F3S A 108

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 7FD1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 7FD1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 7FD1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 7FD1)

(-) Exons   (0, 0)

(no "Exon" information available for 7FD1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains d7fd1a_ A: Ferredoxin                                                                                      SCOP domains
               CATH domains 7fd1A00 A:1-106  [code=3.30.70.20, no name defined]                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhh......hhhhh.....eee....eee...........hhh.....eeehhh..hhhhhhhhhhhhhhh..............hhhh.....hhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 7fd1 A   1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER 106
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 7FD1)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FER1_AZOVI | P00214: 1a6l 1axq 1b0t 1b0v 1d3w 1f5b 1f5c 1fd2 1fda 1fdb 1fdd 1fer 1ff2 1frh 1fri 1frj 1frk 1frl 1frm 1frx 1ftc 1g3o 1g6b 1gao 1pc4 1pc5 2fd2 5fd1 6fd1 6fdr 7fdr

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 7FD1)