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(-) Description

Title :  RABBIT MUSCLE ALDOLASE A/FRUCTOSE-1,6-BISPHOSPHATE COMPLEX
 
Authors :  K. H. Choi, A. S. Mazurkie, A. J. Morris, D. Utheza, D. R. Tolan, K. N. Allen
Date :  23 Dec 98  (Deposition) - 05 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Aldolase A, Fructose-1, 6-Bisphosphate, Linear Hexose, Michaelis Complex, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. H. Choi, A. S. Mazurkie, A. J. Morris, D. Utheza, D. R. Tolan, K. N. Allen
Structure Of A Fructose-1, 6-Bis(Phosphate) Aldolase Liganded To Its Natural Substrate In A Cleavage-Defective Mutant At 2. 3 A(, ).
Biochemistry V. 38 12655 1999
PubMed-ID: 10504235  |  Reference-DOI: 10.1021/BI9828371
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BIS(PHOSPHATE) ALDOLASE
    Chains: A, B, C, D
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOPLASM
    Expression System Collection: ATCC 77473
    Expression System Plasmid: PPB1
    Expression System Strain: DH5ALPHA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: D-FRUCTOSE 1,6-BIS(PHOSPHATE) D-GLYCERALDEHYDE 3- PHOSPHATE LYASE
    Tissue: MUSCLE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
12FP2Ligand/Ion1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:41 , ARG A:42 , LYS A:229 , LEU A:270 , SER A:271 , GLY A:272 , GLY A:273 , SER A:300 , GLY A:302 , ARG A:303 , HOH A:701 , HOH A:776BINDING SITE FOR RESIDUE 2FP A 700
2AC2SOFTWARELYS B:41 , ARG B:42 , LYS B:229 , LEU B:270 , SER B:271 , GLY B:272 , GLY B:273 , SER B:300 , GLY B:302 , ARG B:303BINDING SITE FOR RESIDUE 2FP B 700
3CATUNKNOWNASP A:33 , HOH A:701 , LYS A:229 , SER A:300 , GLU A:187 , HOH A:702 , SER A:271 , GLY A:272 , GLY A:273 , LYS A:41 , ARG A:42 , ARG A:303 , GLY A:302LYS 229 IS THE CATALYTIC SCHIFF-BASE FORMING NUCLEOPHILE. THE SUBSTRATE OBSERVED IS NOT COVALENTLY BOUND. THE STRUCTURE PROBABLY REPRESENTS THE MICHAELIS COMPLEX.
4CTBUNKNOWNASP B:33 , HOH B:701 , LYS B:229 , SER B:300 , GLU B:187 , HOH B:702 , SER B:271 , GLY B:272 , GLY B:273 , LYS B:41 , ARG B:42 , ARG B:303 , GLY B:302LYS 229 IS THE CATALYTIC SCHIFF-BASE FORMING NUCLEOPHILE. THE SUBSTRATE OBSERVED IS NOT COVALENTLY BOUND. THE STRUCTURE PROBABLY REPRESENTS THE MICHAELIS COMPLEX.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 6ALD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:157 -Pro A:158
2Thr B:157 -Pro B:158
3Thr C:157 -Pro C:158
4Thr D:157 -Pro D:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 6ALD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 6ALD)

(-) Exons   (0, 0)

(no "Exon" information available for 6ALD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d6alda_ A: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 6aldA00 A:2-344 Aldolase class I                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhhheeeeee.hhhhh........hhhhhhhh..eeeee....eee.......eee.....hhhhhhhhhh....eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....hhheee................hhhhhhhhhhhhh........eeee......hhhhhhhhhhhhh.......eeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6ald A   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAAWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain B from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d6aldb_ B: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 6aldB00 B:2-344 Aldolase class I                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhhheeeeee.hhhhh........hhhhhhhh..eeeee....eee.......eee.....hhhhhhhhhh....eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....hhheee................hhhhhhhhhhhhh........eeee......hhhhhhhhhhhhh.......eeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6ald B   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAAWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain C from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d6aldc_ C: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 6aldC00 C:2-344 Aldolase class I                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhhheeeeee.hhhhh........hhhhhhhh..eeeee....eee.......eee.....hhhhhhhhhh....eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....hhheee................hhhhhhhhhhhhh........eeee......hhhhhhhhhhhhh.......eeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6ald C   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAAWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain D from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d6aldd_ D: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 6aldD00 D:2-344 Aldolase class I                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.....eeeee...hhhhhhhhhh......hhhhhhhhhhhh...hhhhhheeeeee.hhhhh........hhhhhhhh..eeeee....eee.......eee.....hhhhhhhhhh....eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....hhheee................hhhhhhhhhhhhh........eeee......hhhhhhhhhhhhh.......eeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6ald D   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAAWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 6ALD)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        ALDOA_RABIT | P00883: 1ado 1ewd 1ewe 1ex5 1j4e 1zah 1zai 1zaj 1zal 2ot0 2ot1 2qut 2quu 2quv 3b8d 3bv4 3dfn 3dfo 3dfp 3dfq 3dfs 3dft 3lge 3tu9 5f4x 5vy5

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 6ALD)