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(-) Description

Title :  RABBIT MUSCLE ALDOLASE USING 200KEV
 
Authors :  M. A. Herzik Jr. , M. Wu, G. C. Lander
Date :  24 May 17  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D  (10x)
Biol. Unit 1:  A,B,C,D  (1x)
Keywords :  Glycolytic Enzyme, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Herzik Jr. , M. Wu, G. C. Lander
Achieving Better Than 3 Angstrom Resolution By Single Particle Cryo-Em At 200 Kev
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE A
    Chains: B, A, C, D
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ALDOA
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: MUSCLE-TYPE ALDOLASE
    Tissue: MUSCLE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit (10x): ABCD
Biological Unit 1 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5VY5)

(-) Sites  (0, 0)

(no "Site" information available for 5VY5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VY5)

(-) Cis Peptide Bonds  (4, 40)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr B:157 -Pro B:158
21, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr A:157 -Pro A:158
31, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr C:157 -Pro C:158
41, 2, 3, 4, 5, 6, 7, 8, 9, 10Thr D:157 -Pro D:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VY5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VY5)

(-) Exons   (0, 0)

(no "Exon" information available for 5VY5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhh..eeeeeehhhhhh.......hhhhhhhhh..eeeee...eeee.......eeee...hhhhhhhhhhhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhhh.ee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vy5 A   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain B from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhh..eeeeeehhhhhh.......hhhhhhhhh..eeeee...eeee.......eeee...hhhhhhhhhhhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhhh.ee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vy5 B   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain C from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhh..eeeeeehhhhhh.......hhhhhhhhh..eeeee...eeee.......eeee...hhhhhhhhhhhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhhh.ee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vy5 C   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   


Chain D from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhh..eeeeeehhhhhh.......hhhhhhhhh..eeeee...eeee.......eeee...hhhhhhhhhhhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhhh.ee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vy5 D   2 HSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTP 344
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VY5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VY5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VY5)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr A:157 - Pro A:158   [ RasMol ]  
    Thr B:157 - Pro B:158   [ RasMol ]  
    Thr C:157 - Pro C:158   [ RasMol ]  
    Thr D:157 - Pro D:158   [ RasMol ]  
 
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  ALDOA_RABIT | P00883
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALDOA_RABIT | P00883: 1ado 1ewd 1ewe 1ex5 1j4e 1zah 1zai 1zaj 1zal 2ot0 2ot1 2qut 2quu 2quv 3b8d 3bv4 3dfn 3dfo 3dfp 3dfq 3dfs 3dft 3lge 3tu9 5f4x 6ald

(-) Related Entries Specified in the PDB File

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