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(-) Description

Title :  CRYSTAL STRUCTURE OF VITAMIN D HYDROXYLASE CYTOCHROME P450 105A1 (R84A MUTANT) IN COMPLEX WITH 1,25-DIHYDROXYVITAMIN D2
 
Authors :  K. Hayashi, K. Yasuda, Y. Shiro, H. Sugimoto, T. Sakaki
Date :  25 Feb 17  (Deposition) - 10 May 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Metal-Binding, Monooxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Yasuda, Y. Yogo, H. Sugimoto, H. Mano, T. Takita, M. Ohta, M. Kamakura, S. Ikushiro, K. Yasukawa, Y. Shiro, T. Sakaki
Production Of An Active Form Of Vitamin D2 By Genetically Engineered Cyp105A1
Biochem. Biophys. Res. V. 486 336 2017 Commun.
PubMed-ID: 28302483  |  Reference-DOI: 10.1016/J.BBRC.2017.03.040

(-) Compounds

Molecule 1 - VITAMIN D3 DIHYDROXYLASE
    Atcc: 11796
    Chains: A
    EC Number: 1.14.15.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKK223-3
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CYP105A1, SUAC
    Mutation: YES
    Organism Scientific: STREPTOMYCES GRISEOLUS
    Organism Taxid: 1909
    Synonym: CYP105A1,CYTOCHROME P450-CVA1,CYTOCHROME P450-SU1,VITAMIN D3 HYDROXYLASE,VD3 HYDROXYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
17ZU1Ligand/Ion(1R,3S,5Z)-5-[(2E)-2-[(1R,3AS,7AR)-1-[(E,2R,5S)-5,6-DIMETHYL-6-OXIDANYL-HEPT-3-EN-2-YL]-7A-METHYL-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXANE-1,3-DIOL
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:95 , ILE A:96 , HIS A:103 , ARG A:107 , LEU A:241 , ALA A:244 , THR A:248 , THR A:249 , ALA A:294 , ARG A:297 , ALA A:347 , PHE A:348 , GLY A:349 , VAL A:352 , HIS A:353 , CYS A:355 , GLY A:357 , ALA A:361 , HOH A:647 , HOH A:666 , HOH A:693binding site for residue HEM A 501
2AC2SOFTWAREPRO A:79 , THR A:81 , VAL A:88 , PRO A:92 , ARG A:193 , ILE A:243 , ILE A:293 , GLY A:296 , HOH A:649 , HOH A:770binding site for residue 7ZU A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5X7E)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Phe A:16 -Pro A:17
2Pro A:100 -Pro A:101
3Pro A:142 -Thr A:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X7E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X7E)

(-) Exons   (0, 0)

(no "Exon" information available for 5X7E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhh...eeeee.....eeeee.hhhhhhhhhh...ee...........hhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......eeee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x7e A   4 TATTPQTTDAPAFPSNRSCPYQLPDGYAQLRDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPRLSSNRTDDNFPATSPAFEAVRESPQAFIGLDPPEHGTRRRMTISEFTVKRIKGMRPEVEEVVHGFLDEMLAAGPTADLVSQFALPVPSMVICRLLGVPYADHEFFQDASKRLVQSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIANRDGTVYEDPDALDIHRSARHHLAFGFGVHQCLGQNLARLELEVILNALMDRVPTLRLAVPVEQLVLRPGTTIQGVNELPVTWH 407
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X7E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X7E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X7E)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        CPXE_STRGO | P18326: 2zbx 2zby 2zbz 3cv8 3cv9

(-) Related Entries Specified in the PDB File

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