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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  PREFUSION STRUCTURE OF MERS-COV SPIKE GLYCOPROTEIN, CONFORMATION 2
 
Authors :  Y. Yuan, D. Cao, Y. Zhang, J. Ma, J. Qi, Q. Wang, G. Lu, Y. Wu, J. Yan, Y. Shi, G. F. Gao
Date :  15 Feb 17  (Deposition) - 03 May 17  (Release) - 24 May 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Mers-Cov, Spike Glycoprotein, Prefusion, Single Particle, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yuan, D. Cao, Y. Zhang, J. Ma, J. Qi, Q. Wang, G. Lu, Y. Wu, J. Yan, Y. Shi X. Zhang, G. F. Gao
Cryo-Em Structures Of Mers-Cov And Sars-Cov Spike Glycoproteins Reveal The Dynamic Receptor Binding Domains
Nat Commun V. 8 15092 2017
PubMed-ID: 28393837  |  Reference-DOI: 10.1038/NCOMMS15092

(-) Compounds

Molecule 1 - S PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 18-1294
    Mutation: YES
    Organism Scientific: MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS
    Organism Taxid: 1335626
    Synonym: SPIKE GLYCOPROTEIN,SPIKE PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5X5F)

(-) Sites  (0, 0)

(no "Site" information available for 5X5F)

(-) SS Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1A:30 -A:195
2A:176 -A:214
3A:185 -A:237
4A:339 -A:349
5A:383 -A:407
6A:425 -A:478
7A:437 -A:585
8A:503 -A:526
9A:620 -A:650
10A:679 -A:713
11A:811 -A:817
12A:1106 -A:1117
13B:30 -B:195
14B:176 -B:214
15B:185 -B:237
16B:339 -B:349
17B:383 -B:407
18B:425 -B:478
19B:437 -B:585
20B:503 -B:526
21B:620 -B:650
22B:679 -B:713
23B:811 -B:817
24B:1106 -B:1117
25C:30 -C:195
26C:176 -C:214
27C:185 -C:237
28C:339 -C:349
29C:383 -C:407
30C:425 -C:478
31C:437 -C:585
32C:503 -C:526
33C:620 -C:650
34C:679 -C:713
35C:811 -C:817
36C:1106 -C:1117

(-) Cis Peptide Bonds  (119, 119)

Asymmetric/Biological Unit
No.Residues
1Ser A:365 -Phe A:366
2Gly A:578 -Thr A:579
3Thr A:581 -Asn A:582
4Gln A:599 -Leu A:600
5Val A:604 -Glu A:605
6Thr A:621 -Ala A:622
7Asp A:645 -Gly A:646
8Val A:677 -Ala A:678
9Ser A:692 -Thr A:693
10Thr A:693 -Arg A:694
11Gly A:712 -Cys A:713
12Ser A:721 -Leu A:722
13Val A:724 -Glu A:725
14Asp A:726 -Cys A:727
15Lys A:728 -Leu A:729
16Leu A:729 -Pro A:730
17Gly A:732 -Gln A:733
18Ser A:743 -Thr A:744
19Phe A:764 -Asn A:765
20Asn A:765 -His A:766
21Val A:810 -Cys A:811
22Ser A:859 -Pro A:860
23Gly A:867 -Asp A:868
24Asp A:902 -Pro A:903
25Ala A:930 -Gly A:931
26Trp A:960 -Thr A:961
27Thr A:961 -Ala A:962
28Leu A:964 -Ser A:965
29Asn A:993 -Gln A:994
30Thr A:1013 -Thr A:1014
31Glu A:1017 -Ala A:1018
32Asn A:1042 -Thr A:1043
33Leu A:1058 -Asp A:1059
34Gln A:1110 -Ser A:1111
35Ser A:1151 -Ala A:1152
36Cys A:1164 -Ile A:1165
37Ala A:1166 -Pro A:1167
38Asn A:1169 -Gly A:1170
39Lys A:1174 -Thr A:1175
40Val A:1181 -Asp A:1182
41Trp A:1184 -Ser A:1185
42Ser B:365 -Phe B:366
43Gln B:576 -Tyr B:577
44Gln B:599 -Leu B:600
45Val B:604 -Glu B:605
46Thr B:621 -Ala B:622
47Asp B:645 -Gly B:646
48Val B:677 -Ala B:678
49Ser B:692 -Thr B:693
50Thr B:693 -Arg B:694
51Gly B:712 -Cys B:713
52Ser B:721 -Leu B:722
53Val B:724 -Glu B:725
54Asp B:726 -Cys B:727
55Lys B:728 -Leu B:729
56Leu B:729 -Pro B:730
57Gly B:732 -Gln B:733
58Ser B:743 -Thr B:744
59Phe B:764 -Asn B:765
60Asn B:765 -His B:766
61Val B:810 -Cys B:811
62Ser B:859 -Pro B:860
63Gly B:867 -Asp B:868
64Asp B:902 -Pro B:903
65Ala B:930 -Gly B:931
66Trp B:960 -Thr B:961
67Thr B:961 -Ala B:962
68Leu B:964 -Ser B:965
69Asn B:993 -Gln B:994
70Thr B:1013 -Thr B:1014
71Glu B:1017 -Ala B:1018
72Asn B:1042 -Thr B:1043
73Leu B:1058 -Asp B:1059
74Gln B:1110 -Ser B:1111
75Ser B:1151 -Ala B:1152
76Cys B:1164 -Ile B:1165
77Ala B:1166 -Pro B:1167
78Asn B:1169 -Gly B:1170
79Lys B:1174 -Thr B:1175
80Val B:1181 -Asp B:1182
81Trp B:1184 -Ser B:1185
82Ser C:365 -Phe C:366
83Gln C:599 -Leu C:600
84Val C:604 -Glu C:605
85Thr C:621 -Ala C:622
86Asp C:645 -Gly C:646
87Val C:677 -Ala C:678
88Ser C:692 -Thr C:693
89Thr C:693 -Arg C:694
90Gly C:712 -Cys C:713
91Ser C:721 -Leu C:722
92Val C:724 -Glu C:725
93Asp C:726 -Cys C:727
94Lys C:728 -Leu C:729
95Leu C:729 -Pro C:730
96Gly C:732 -Gln C:733
97Ser C:743 -Thr C:744
98Phe C:764 -Asn C:765
99Asn C:765 -His C:766
100Val C:810 -Cys C:811
101Ser C:859 -Pro C:860
102Gly C:867 -Asp C:868
103Asp C:902 -Pro C:903
104Ala C:930 -Gly C:931
105Trp C:960 -Thr C:961
106Thr C:961 -Ala C:962
107Leu C:964 -Ser C:965
108Asn C:993 -Gln C:994
109Thr C:1013 -Thr C:1014
110Glu C:1017 -Ala C:1018
111Asn C:1042 -Thr C:1043
112Gln C:1110 -Ser C:1111
113Ser C:1151 -Ala C:1152
114Cys C:1164 -Ile C:1165
115Ala C:1166 -Pro C:1167
116Asn C:1169 -Gly C:1170
117Lys C:1174 -Thr C:1175
118Val C:1181 -Asp C:1182
119Trp C:1184 -Ser C:1185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X5F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X5F)

(-) Exons   (0, 0)

(no "Exon" information available for 5X5F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..................eeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeeeee..hhhhhhhhhh.........ee............ee......hhhhh.....hhhhheeeee..eeehhhhhhhhheeeeeeee..hhhhhhhh...eeeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeeee......eee........................eeeee........eeeeeeeeee.....eeeeeeeee.......eee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5f A   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..............eeeeeeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeeeee...hhhhhhhhh.........ee............ee......hhhhhh....hhhhheeeee..eeehhhhhhhhheeeeeeee..hhhhhhhh....eeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeeee......eee........................eeeee........eeeeeeeeee.....eeeeeee.........eee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5f B   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924                                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..............eeeeeeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeeee...hhhhhhhhhhhh.......ee............ee......hhhhhh....hhhhheeeee..eeehhhhhhhhheeeeeeee..hhhhhhhh...eeeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeeee......eee........................eeeee........eeeeeeeeee.....eeeeeeeee.......eee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5f C   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X5F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X5F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X5F)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5x5f)
 
  Sites
(no "Sites" information available for 5x5f)
 
  Cis Peptide Bonds
    Ala A:1166 - Pro A:1167   [ RasMol ]  
    Ala A:930 - Gly A:931   [ RasMol ]  
    Ala B:1166 - Pro B:1167   [ RasMol ]  
    Ala B:930 - Gly B:931   [ RasMol ]  
    Ala C:1166 - Pro C:1167   [ RasMol ]  
    Ala C:930 - Gly C:931   [ RasMol ]  
    Asn A:1042 - Thr A:1043   [ RasMol ]  
    Asn A:1169 - Gly A:1170   [ RasMol ]  
    Asn A:765 - His A:766   [ RasMol ]  
    Asn A:993 - Gln A:994   [ RasMol ]  
    Asn B:1042 - Thr B:1043   [ RasMol ]  
    Asn B:1169 - Gly B:1170   [ RasMol ]  
    Asn B:765 - His B:766   [ RasMol ]  
    Asn B:993 - Gln B:994   [ RasMol ]  
    Asn C:1042 - Thr C:1043   [ RasMol ]  
    Asn C:1169 - Gly C:1170   [ RasMol ]  
    Asn C:765 - His C:766   [ RasMol ]  
    Asn C:993 - Gln C:994   [ RasMol ]  
    Asp A:645 - Gly A:646   [ RasMol ]  
    Asp A:726 - Cys A:727   [ RasMol ]  
    Asp A:902 - Pro A:903   [ RasMol ]  
    Asp B:645 - Gly B:646   [ RasMol ]  
    Asp B:726 - Cys B:727   [ RasMol ]  
    Asp B:902 - Pro B:903   [ RasMol ]  
    Asp C:645 - Gly C:646   [ RasMol ]  
    Asp C:726 - Cys C:727   [ RasMol ]  
    Asp C:902 - Pro C:903   [ RasMol ]  
    Cys A:1164 - Ile A:1165   [ RasMol ]  
    Cys B:1164 - Ile B:1165   [ RasMol ]  
    Cys C:1164 - Ile C:1165   [ RasMol ]  
    Gln A:1110 - Ser A:1111   [ RasMol ]  
    Gln A:599 - Leu A:600   [ RasMol ]  
    Gln B:1110 - Ser B:1111   [ RasMol ]  
    Gln B:576 - Tyr B:577   [ RasMol ]  
    Gln B:599 - Leu B:600   [ RasMol ]  
    Gln C:1110 - Ser C:1111   [ RasMol ]  
    Gln C:599 - Leu C:600   [ RasMol ]  
    Glu A:1017 - Ala A:1018   [ RasMol ]  
    Glu B:1017 - Ala B:1018   [ RasMol ]  
    Glu C:1017 - Ala C:1018   [ RasMol ]  
    Gly A:578 - Thr A:579   [ RasMol ]  
    Gly A:712 - Cys A:713   [ RasMol ]  
    Gly A:732 - Gln A:733   [ RasMol ]  
    Gly A:867 - Asp A:868   [ RasMol ]  
    Gly B:712 - Cys B:713   [ RasMol ]  
    Gly B:732 - Gln B:733   [ RasMol ]  
    Gly B:867 - Asp B:868   [ RasMol ]  
    Gly C:712 - Cys C:713   [ RasMol ]  
    Gly C:732 - Gln C:733   [ RasMol ]  
    Gly C:867 - Asp C:868   [ RasMol ]  
    Leu A:1058 - Asp A:1059   [ RasMol ]  
    Leu A:729 - Pro A:730   [ RasMol ]  
    Leu A:964 - Ser A:965   [ RasMol ]  
    Leu B:1058 - Asp B:1059   [ RasMol ]  
    Leu B:729 - Pro B:730   [ RasMol ]  
    Leu B:964 - Ser B:965   [ RasMol ]  
    Leu C:729 - Pro C:730   [ RasMol ]  
    Leu C:964 - Ser C:965   [ RasMol ]  
    Lys A:1174 - Thr A:1175   [ RasMol ]  
    Lys A:728 - Leu A:729   [ RasMol ]  
    Lys B:1174 - Thr B:1175   [ RasMol ]  
    Lys B:728 - Leu B:729   [ RasMol ]  
    Lys C:1174 - Thr C:1175   [ RasMol ]  
    Lys C:728 - Leu C:729   [ RasMol ]  
    Phe A:764 - Asn A:765   [ RasMol ]  
    Phe B:764 - Asn B:765   [ RasMol ]  
    Phe C:764 - Asn C:765   [ RasMol ]  
    Ser A:1151 - Ala A:1152   [ RasMol ]  
    Ser A:365 - Phe A:366   [ RasMol ]  
    Ser A:692 - Thr A:693   [ RasMol ]  
    Ser A:721 - Leu A:722   [ RasMol ]  
    Ser A:743 - Thr A:744   [ RasMol ]  
    Ser A:859 - Pro A:860   [ RasMol ]  
    Ser B:1151 - Ala B:1152   [ RasMol ]  
    Ser B:365 - Phe B:366   [ RasMol ]  
    Ser B:692 - Thr B:693   [ RasMol ]  
    Ser B:721 - Leu B:722   [ RasMol ]  
    Ser B:743 - Thr B:744   [ RasMol ]  
    Ser B:859 - Pro B:860   [ RasMol ]  
    Ser C:1151 - Ala C:1152   [ RasMol ]  
    Ser C:365 - Phe C:366   [ RasMol ]  
    Ser C:692 - Thr C:693   [ RasMol ]  
    Ser C:721 - Leu C:722   [ RasMol ]  
    Ser C:743 - Thr C:744   [ RasMol ]  
    Ser C:859 - Pro C:860   [ RasMol ]  
    Thr A:1013 - Thr A:1014   [ RasMol ]  
    Thr A:581 - Asn A:582   [ RasMol ]  
    Thr A:621 - Ala A:622   [ RasMol ]  
    Thr A:693 - Arg A:694   [ RasMol ]  
    Thr A:961 - Ala A:962   [ RasMol ]  
    Thr B:1013 - Thr B:1014   [ RasMol ]  
    Thr B:621 - Ala B:622   [ RasMol ]  
    Thr B:693 - Arg B:694   [ RasMol ]  
    Thr B:961 - Ala B:962   [ RasMol ]  
    Thr C:1013 - Thr C:1014   [ RasMol ]  
    Thr C:621 - Ala C:622   [ RasMol ]  
    Thr C:693 - Arg C:694   [ RasMol ]  
    Thr C:961 - Ala C:962   [ RasMol ]  
    Trp A:1184 - Ser A:1185   [ RasMol ]  
    Trp A:960 - Thr A:961   [ RasMol ]  
    Trp B:1184 - Ser B:1185   [ RasMol ]  
    Trp B:960 - Thr B:961   [ RasMol ]  
    Trp C:1184 - Ser C:1185   [ RasMol ]  
    Trp C:960 - Thr C:961   [ RasMol ]  
    Val A:1181 - Asp A:1182   [ RasMol ]  
    Val A:604 - Glu A:605   [ RasMol ]  
    Val A:677 - Ala A:678   [ RasMol ]  
    Val A:724 - Glu A:725   [ RasMol ]  
    Val A:810 - Cys A:811   [ RasMol ]  
    Val B:1181 - Asp B:1182   [ RasMol ]  
    Val B:604 - Glu B:605   [ RasMol ]  
    Val B:677 - Ala B:678   [ RasMol ]  
    Val B:724 - Glu B:725   [ RasMol ]  
    Val B:810 - Cys B:811   [ RasMol ]  
    Val C:1181 - Asp C:1182   [ RasMol ]  
    Val C:604 - Glu C:605   [ RasMol ]  
    Val C:677 - Ala C:678   [ RasMol ]  
    Val C:724 - Glu C:725   [ RasMol ]  
    Val C:810 - Cys C:811   [ RasMol ]  
 

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Access by PDB/NDB ID
  5x5f
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
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Access by UniProt ID/Accession number
  W6A028_9BETC | W6A028
    Comparative Protein Structure Models: ModBase
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    Interatomic Contacts of Structural Units: CSU
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  W6A028_9BETC | W6A028
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        W6A028_9BETC | W6A028: 5x4r 5x59 5x5c

(-) Related Entries Specified in the PDB File

5x59 5X59 CONTAINS THE SAME PROTEIN IN DIFFERENT CONFORMATION RELATED ID: EMD-6707 RELATED DB: EMDB PREFUSION STRUCTURE OF MERS-COV SPIKE GLYCOPROTEIN, CONFORMATION 2