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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  PREFUSION STRUCTURE OF MERS-COV SPIKE GLYCOPROTEIN, CONFORMATION 1
 
Authors :  Y. Yuan, D. Cao, Y. Zhang, J. Ma, J. Qi, Q. Wang, G. Lu, Y. Wu, J. Yan, Y. Shi, G. F. Gao
Date :  15 Feb 17  (Deposition) - 03 May 17  (Release) - 24 May 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Mers-Cov, Spike Glycoprotein, Prefusion, Single Particle, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yuan, D. Cao, Y. Zhang, J. Ma, J. Qi, Q. Wang, G. Lu, Y. Wu, J. Yan, Y. Shi X. Zhang, G. F. Gao
Cryo-Em Structures Of Mers-Cov And Sars-Cov Spike Glycoproteins Reveal The Dynamic Receptor Binding Domains
Nat Commun V. 8 15092 2017
PubMed-ID: 28393837  |  Reference-DOI: 10.1038/NCOMMS15092

(-) Compounds

Molecule 1 - S PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 18-1294
    Mutation: YES
    Organism Scientific: MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS
    Organism Taxid: 1335626
    Synonym: SPIKE GLYCOPROTEIN,SPIKE PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5X5C)

(-) Sites  (0, 0)

(no "Site" information available for 5X5C)

(-) SS Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1A:30 -A:195
2A:176 -A:214
3A:185 -A:237
4A:339 -A:349
5A:383 -A:407
6A:425 -A:478
7A:437 -A:585
8A:503 -A:526
9A:620 -A:650
10A:679 -A:713
11A:811 -A:817
12A:1106 -A:1117
13B:30 -B:195
14B:176 -B:214
15B:185 -B:237
16B:339 -B:349
17B:383 -B:407
18B:425 -B:478
19B:437 -B:585
20B:503 -B:526
21B:620 -B:650
22B:679 -B:713
23B:811 -B:817
24B:1106 -B:1117
25C:30 -C:195
26C:176 -C:214
27C:185 -C:237
28C:339 -C:349
29C:383 -C:407
30C:425 -C:478
31C:437 -C:585
32C:503 -C:526
33C:620 -C:650
34C:679 -C:713
35C:811 -C:817
36C:1106 -C:1117

(-) Cis Peptide Bonds  (117, 117)

Asymmetric/Biological Unit
No.Residues
1Ser A:365 -Phe A:366
2Gln A:599 -Leu A:600
3Val A:604 -Glu A:605
4Thr A:621 -Ala A:622
5Asp A:645 -Gly A:646
6Val A:677 -Ala A:678
7Ser A:692 -Thr A:693
8Thr A:693 -Arg A:694
9Gly A:712 -Cys A:713
10Ser A:721 -Leu A:722
11Val A:724 -Glu A:725
12Asp A:726 -Cys A:727
13Lys A:728 -Leu A:729
14Leu A:729 -Pro A:730
15Gly A:732 -Gln A:733
16Ser A:743 -Thr A:744
17Phe A:764 -Asn A:765
18Asn A:765 -His A:766
19Val A:810 -Cys A:811
20Ser A:859 -Pro A:860
21Gly A:867 -Asp A:868
22Asp A:902 -Pro A:903
23Ala A:930 -Gly A:931
24Trp A:960 -Thr A:961
25Thr A:961 -Ala A:962
26Leu A:964 -Ser A:965
27Asn A:993 -Gln A:994
28Thr A:1013 -Thr A:1014
29Glu A:1017 -Ala A:1018
30Asn A:1042 -Thr A:1043
31Leu A:1058 -Asp A:1059
32Gln A:1110 -Ser A:1111
33Ser A:1151 -Ala A:1152
34Cys A:1164 -Ile A:1165
35Ala A:1166 -Pro A:1167
36Asn A:1169 -Gly A:1170
37Lys A:1174 -Thr A:1175
38Val A:1181 -Asp A:1182
39Trp A:1184 -Ser A:1185
40Ser B:365 -Phe B:366
41Gln B:576 -Tyr B:577
42Gln B:599 -Leu B:600
43Val B:604 -Glu B:605
44Thr B:621 -Ala B:622
45Asp B:645 -Gly B:646
46Val B:677 -Ala B:678
47Ser B:692 -Thr B:693
48Thr B:693 -Arg B:694
49Gly B:712 -Cys B:713
50Ser B:721 -Leu B:722
51Val B:724 -Glu B:725
52Asp B:726 -Cys B:727
53Lys B:728 -Leu B:729
54Leu B:729 -Pro B:730
55Gly B:732 -Gln B:733
56Ser B:743 -Thr B:744
57Phe B:764 -Asn B:765
58Asn B:765 -His B:766
59Val B:810 -Cys B:811
60Ser B:859 -Pro B:860
61Gly B:867 -Asp B:868
62Asp B:902 -Pro B:903
63Ala B:930 -Gly B:931
64Trp B:960 -Thr B:961
65Thr B:961 -Ala B:962
66Leu B:964 -Ser B:965
67Asn B:993 -Gln B:994
68Thr B:1013 -Thr B:1014
69Glu B:1017 -Ala B:1018
70Asn B:1042 -Thr B:1043
71Leu B:1058 -Asp B:1059
72Gln B:1110 -Ser B:1111
73Ser B:1151 -Ala B:1152
74Cys B:1164 -Ile B:1165
75Ala B:1166 -Pro B:1167
76Asn B:1169 -Gly B:1170
77Lys B:1174 -Thr B:1175
78Val B:1181 -Asp B:1182
79Trp B:1184 -Ser B:1185
80Ser C:365 -Phe C:366
81Gln C:599 -Leu C:600
82Val C:604 -Glu C:605
83Thr C:621 -Ala C:622
84Asp C:645 -Gly C:646
85Val C:677 -Ala C:678
86Ser C:692 -Thr C:693
87Thr C:693 -Arg C:694
88Gly C:712 -Cys C:713
89Ser C:721 -Leu C:722
90Val C:724 -Glu C:725
91Asp C:726 -Cys C:727
92Lys C:728 -Leu C:729
93Leu C:729 -Pro C:730
94Gly C:732 -Gln C:733
95Ser C:743 -Thr C:744
96Phe C:764 -Asn C:765
97Asn C:765 -His C:766
98Val C:810 -Cys C:811
99Ser C:859 -Pro C:860
100Gly C:867 -Asp C:868
101Asp C:902 -Pro C:903
102Ala C:930 -Gly C:931
103Trp C:960 -Thr C:961
104Thr C:961 -Ala C:962
105Leu C:964 -Ser C:965
106Asn C:993 -Gln C:994
107Thr C:1013 -Thr C:1014
108Glu C:1017 -Ala C:1018
109Asn C:1042 -Thr C:1043
110Gln C:1110 -Ser C:1111
111Ser C:1151 -Ala C:1152
112Cys C:1164 -Ile C:1165
113Ala C:1166 -Pro C:1167
114Asn C:1169 -Gly C:1170
115Lys C:1174 -Thr C:1175
116Val C:1181 -Asp C:1182
117Trp C:1184 -Ser C:1185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X5C)

(-) Exons   (0, 0)

(no "Exon" information available for 5X5C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..................eeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeeeee..hhhhhhhhhh.........ee............ee......hhhhhh....hhhhheeeee..eeehhhhhhhhheeeeeeee..hhhhhhhh...eeeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeeee......eee........................eeeee........eeeeeeeeee.....eeeeeeeee.......eee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5c A   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..............eeeeeeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeeeee...hhhhhhhhh.........ee............ee......hhhhhh....hhhhheeeeee..eehhhhhhhhheeeeeeee..hhhhhhhh...eeeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeee........ee........................eeeee........eeeeeeeeee.....eeeeeeeee........ee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5c B   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924                                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:1141
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee.hhhh........hhhhh..............eeeeeeee.......eee..ee..........eee.hhhhh.ee....eeeee......eee.......eeeee.....eeee..eee.....eeee..eeeeeeee....eeeeeeeeeee................eeehhhhhh.......hhhhhhhhhheeeeeeeeeeeee.......eeeeeeee..eeeeee...........eeeeee.......eeee..eee..hhhhh.ee..eeeee.eeeeeeeee.....eeee....hhhhhhhhhhhh.......ee............ee......hhhhhh....hhhhheeeee..eeehhhhhhhhheeeeeeee..hhhhhhhh...eeeeeeee.hhhhhhhh.....hhhhhhh........eeeeeee............eeeeeeeeeee......eee........................eeeee........eeeeeeeeee.....eeeeeeeee.......eee.............ee..........ee.............................ee..........ee.............................................................................................eeee....................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhh.........hhhhhhhh.........ee......hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eee..............ee......eeee........................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5x5c C   18 YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCALPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDKVTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVA 1206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377|      390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       596       606       616       626       636       646       656       666       676       686       696 ||    717       727       737      |759       769       779       789       799       809       819       829       839       849       859       869       887       897       907       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205 
                                                                                                                                                                                                                                                                                                                                                                                                 377|                                                                                                                                                                                                            588|                                                                                                    698|                               744|                                                                                                                     877|                          915|                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                  381                                                                                                                                                                                                             595                                                                                                     710                                757                                                                                                                      886                           924
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X5C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X5C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X5C)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
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    STRAP
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    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5x5c)
 
  Sites
(no "Sites" information available for 5x5c)
 
  Cis Peptide Bonds
    Ala A:1166 - Pro A:1167   [ RasMol ]  
    Ala A:930 - Gly A:931   [ RasMol ]  
    Ala B:1166 - Pro B:1167   [ RasMol ]  
    Ala B:930 - Gly B:931   [ RasMol ]  
    Ala C:1166 - Pro C:1167   [ RasMol ]  
    Ala C:930 - Gly C:931   [ RasMol ]  
    Asn A:1042 - Thr A:1043   [ RasMol ]  
    Asn A:1169 - Gly A:1170   [ RasMol ]  
    Asn A:765 - His A:766   [ RasMol ]  
    Asn A:993 - Gln A:994   [ RasMol ]  
    Asn B:1042 - Thr B:1043   [ RasMol ]  
    Asn B:1169 - Gly B:1170   [ RasMol ]  
    Asn B:765 - His B:766   [ RasMol ]  
    Asn B:993 - Gln B:994   [ RasMol ]  
    Asn C:1042 - Thr C:1043   [ RasMol ]  
    Asn C:1169 - Gly C:1170   [ RasMol ]  
    Asn C:765 - His C:766   [ RasMol ]  
    Asn C:993 - Gln C:994   [ RasMol ]  
    Asp A:645 - Gly A:646   [ RasMol ]  
    Asp A:726 - Cys A:727   [ RasMol ]  
    Asp A:902 - Pro A:903   [ RasMol ]  
    Asp B:645 - Gly B:646   [ RasMol ]  
    Asp B:726 - Cys B:727   [ RasMol ]  
    Asp B:902 - Pro B:903   [ RasMol ]  
    Asp C:645 - Gly C:646   [ RasMol ]  
    Asp C:726 - Cys C:727   [ RasMol ]  
    Asp C:902 - Pro C:903   [ RasMol ]  
    Cys A:1164 - Ile A:1165   [ RasMol ]  
    Cys B:1164 - Ile B:1165   [ RasMol ]  
    Cys C:1164 - Ile C:1165   [ RasMol ]  
    Gln A:1110 - Ser A:1111   [ RasMol ]  
    Gln A:599 - Leu A:600   [ RasMol ]  
    Gln B:1110 - Ser B:1111   [ RasMol ]  
    Gln B:576 - Tyr B:577   [ RasMol ]  
    Gln B:599 - Leu B:600   [ RasMol ]  
    Gln C:1110 - Ser C:1111   [ RasMol ]  
    Gln C:599 - Leu C:600   [ RasMol ]  
    Glu A:1017 - Ala A:1018   [ RasMol ]  
    Glu B:1017 - Ala B:1018   [ RasMol ]  
    Glu C:1017 - Ala C:1018   [ RasMol ]  
    Gly A:712 - Cys A:713   [ RasMol ]  
    Gly A:732 - Gln A:733   [ RasMol ]  
    Gly A:867 - Asp A:868   [ RasMol ]  
    Gly B:712 - Cys B:713   [ RasMol ]  
    Gly B:732 - Gln B:733   [ RasMol ]  
    Gly B:867 - Asp B:868   [ RasMol ]  
    Gly C:712 - Cys C:713   [ RasMol ]  
    Gly C:732 - Gln C:733   [ RasMol ]  
    Gly C:867 - Asp C:868   [ RasMol ]  
    Leu A:1058 - Asp A:1059   [ RasMol ]  
    Leu A:729 - Pro A:730   [ RasMol ]  
    Leu A:964 - Ser A:965   [ RasMol ]  
    Leu B:1058 - Asp B:1059   [ RasMol ]  
    Leu B:729 - Pro B:730   [ RasMol ]  
    Leu B:964 - Ser B:965   [ RasMol ]  
    Leu C:729 - Pro C:730   [ RasMol ]  
    Leu C:964 - Ser C:965   [ RasMol ]  
    Lys A:1174 - Thr A:1175   [ RasMol ]  
    Lys A:728 - Leu A:729   [ RasMol ]  
    Lys B:1174 - Thr B:1175   [ RasMol ]  
    Lys B:728 - Leu B:729   [ RasMol ]  
    Lys C:1174 - Thr C:1175   [ RasMol ]  
    Lys C:728 - Leu C:729   [ RasMol ]  
    Phe A:764 - Asn A:765   [ RasMol ]  
    Phe B:764 - Asn B:765   [ RasMol ]  
    Phe C:764 - Asn C:765   [ RasMol ]  
    Ser A:1151 - Ala A:1152   [ RasMol ]  
    Ser A:365 - Phe A:366   [ RasMol ]  
    Ser A:692 - Thr A:693   [ RasMol ]  
    Ser A:721 - Leu A:722   [ RasMol ]  
    Ser A:743 - Thr A:744   [ RasMol ]  
    Ser A:859 - Pro A:860   [ RasMol ]  
    Ser B:1151 - Ala B:1152   [ RasMol ]  
    Ser B:365 - Phe B:366   [ RasMol ]  
    Ser B:692 - Thr B:693   [ RasMol ]  
    Ser B:721 - Leu B:722   [ RasMol ]  
    Ser B:743 - Thr B:744   [ RasMol ]  
    Ser B:859 - Pro B:860   [ RasMol ]  
    Ser C:1151 - Ala C:1152   [ RasMol ]  
    Ser C:365 - Phe C:366   [ RasMol ]  
    Ser C:692 - Thr C:693   [ RasMol ]  
    Ser C:721 - Leu C:722   [ RasMol ]  
    Ser C:743 - Thr C:744   [ RasMol ]  
    Ser C:859 - Pro C:860   [ RasMol ]  
    Thr A:1013 - Thr A:1014   [ RasMol ]  
    Thr A:621 - Ala A:622   [ RasMol ]  
    Thr A:693 - Arg A:694   [ RasMol ]  
    Thr A:961 - Ala A:962   [ RasMol ]  
    Thr B:1013 - Thr B:1014   [ RasMol ]  
    Thr B:621 - Ala B:622   [ RasMol ]  
    Thr B:693 - Arg B:694   [ RasMol ]  
    Thr B:961 - Ala B:962   [ RasMol ]  
    Thr C:1013 - Thr C:1014   [ RasMol ]  
    Thr C:621 - Ala C:622   [ RasMol ]  
    Thr C:693 - Arg C:694   [ RasMol ]  
    Thr C:961 - Ala C:962   [ RasMol ]  
    Trp A:1184 - Ser A:1185   [ RasMol ]  
    Trp A:960 - Thr A:961   [ RasMol ]  
    Trp B:1184 - Ser B:1185   [ RasMol ]  
    Trp B:960 - Thr B:961   [ RasMol ]  
    Trp C:1184 - Ser C:1185   [ RasMol ]  
    Trp C:960 - Thr C:961   [ RasMol ]  
    Val A:1181 - Asp A:1182   [ RasMol ]  
    Val A:604 - Glu A:605   [ RasMol ]  
    Val A:677 - Ala A:678   [ RasMol ]  
    Val A:724 - Glu A:725   [ RasMol ]  
    Val A:810 - Cys A:811   [ RasMol ]  
    Val B:1181 - Asp B:1182   [ RasMol ]  
    Val B:604 - Glu B:605   [ RasMol ]  
    Val B:677 - Ala B:678   [ RasMol ]  
    Val B:724 - Glu B:725   [ RasMol ]  
    Val B:810 - Cys B:811   [ RasMol ]  
    Val C:1181 - Asp C:1182   [ RasMol ]  
    Val C:604 - Glu C:605   [ RasMol ]  
    Val C:677 - Ala C:678   [ RasMol ]  
    Val C:724 - Glu C:725   [ RasMol ]  
    Val C:810 - Cys C:811   [ RasMol ]  
 

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 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5x5c
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  W6A028_9BETC | W6A028
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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    Age Related Information: GenAge

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
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  W6A028_9BETC | W6A028
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        W6A028_9BETC | W6A028: 5x4r 5x59 5x5f

(-) Related Entries Specified in the PDB File

5x59 5X59 CONTAINS THE SAME PROTEIN IN DIFFERENT CONFORMATION RELATED ID: EMD-6706 RELATED DB: EMDB PREFUSION STRUCTURE OF MERS-COV SPIKE GLYCOPROTEIN, CONFORMATION 1