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(-) Description

Title :  CRYSTAL STRUCTURE OF ALICYCLOBACILLUS ACIDOTERRESTRIS C2C1 IN COMPLEX WITH SINGLE-GUIDE RNA AT 3.1 ANGSTROM RESOLUTION
 
Authors :  L. Liu, Y. L. Wang
Date :  26 Nov 16  (Deposition) - 25 Jan 17  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.13
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Crispr-Cas Endonuclease, Recognition Lobe, Nuclease Lobe, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Liu, P. Chen, M. Wang, X. Li, J. Wang, M. Yin, Y. Wang
C2C1-Sgrna Complex Structure Reveals Rna-Guided Dna Cleavag Mechanism
Mol. Cell V. 65 310 2017
PubMed-ID: 27989439  |  Reference-DOI: 10.1016/J.MOLCEL.2016.11.040

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED ENDONUCLEASE C2C1
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: C2C1, N007_06525
    Organism Scientific: ALICYCLOBACILLUS ACIDOTERRESTRIS
    Organism Taxid: 1356854
    Strain: ATCC 49025 / DSM 3922 / CIP 106132 / NCIMB 13137 / GD3B
    Synonym: AACC2C1
 
Molecule 2 - RNA (60-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: ALICYCLOBACILLUS ACIDOTERRESTRIS ATCC 49025
    Organism Taxid: 1356854
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 19)

Asymmetric/Biological Unit (1, 19)
No.NameCountTypeFull Name
1MSE19Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5WQE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WQE)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric/Biological Unit
No.Residues
1Glu A:46 -Asn A:47
2Gly A:87 -Pro A:88
3Lys A:188 -Pro A:189
4Thr A:330 -Arg A:331
5Glu A:353 -Asp A:354
6Ser A:660 -Glu A:661
7Gln A:676 -Pro A:677
8Gly A:755 -Asn A:756
9Asp A:828 -Glu A:829
10Arg A:830 -Gly A:831
11Ser A:851 -Glu A:852
12Glu A:852 -Tyr A:853
13Ala A:903 -Arg A:904
14Thr A:905 -Gly A:906
15Gly A:957 -Glu A:958
16Ser A:965 -Ala A:966
17Glu A:968 -Gly A:969
18Thr A:1017 -Gly A:1018
19Lys A:1019 -Arg A:1020

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WQE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WQE)

(-) Exons   (0, 0)

(no "Exon" information available for 5WQE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1011
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee...eeeehhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhh...hhhhhhhhhhhhhhhhhh..................ee.ee......eeeee.........eeeee..eeee..eeee..eeeee...hhhhhheee.......eeeee......eeeeeeeeeeee...hhhhh.......eeeeeeeeehhhhhh..........eeee....eeee..hhhhhhhhhh.......hhhhh...eeeeeee.....eeeeeeeeee..............eee......eeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.......eeee......eeeee................hhhhhhhhhhhhhhhhhhh.....eeeee................eee..............eeeeee.....eeeeeehhhhhhhhhhhhhhh..hhhh.eeeeeeee....eeeee.....hhhhhhh..eee.....eeeee.....hhhhhhhhhhhhhhh..eeeee...........eeehhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5wqe A    2 AVKSIKVKLRLDDmPEIRAGLWKLHKEVNAGVRYYTEWLSLLRQENLYRRSPQECDKTAEECKAELLERLRARQVENGHRGPAGSDDELLQLARQLYELLVPQAIGAKGDAQQIARKFLSPLADKDAVRTADVLRALADFGLKPLmRVYTDSEmSSVEWKPLRKGQAVRTWDRDmFQQAIERmmSWESWNQRVGQEYAKLVEQKNRFEQKNFVGQEHLVHLVNQLQQDmKEATGRALRGSDKVFEKWGKLAPDAPFDLYDAEIKNVQRRNTRRFGSHDLFAKLAEPEYQALWREDASFLTRYAVYNSILRKLNHAKmFATFTLPDATAHPIWTRFDKLGGNLHQYTFLFNEFGERRHAIRFHKLLKVENGVAREVDDVTVPISmSEQLDNLLPRDPNEPIALYFRDYGAEQHFTGEFGGAKIQCRRDQLAHmHGARDVYLNVSVRVQSQSEARGERRPPYAAVFRLVGDNHRAFVHFDKLSDYLAEHPDDGKLGSEGLLSGLRVmSVDLGLRTSASISVFRVARKDELKPNSKGRVPFFFPIKGNDNLVAVHERSQLLKLPGETESKDLRAIREERQRTLRQLRTQLAYLRLLVRCGSEDVGRRERSWAKLIEQPVDAANHmTPDWREAFENELQKLKSLHGICSDKEWmDAVYESVRRVWRHmGKQVRDWRKDVRSGERPKIRGYAKDVVGGNSIEQIEYLERQYKFLKSWSFFGKVSGQVIRAEKGSRFAITLREHIDHAKEDRLKKLADRIImEALGYVYALDERGKGKWVAKYPPCQLILLEELSEYQFNNDRPPSENNQLmQWSHRGVFQELINQAQVHDLLVGTmYAAFSSRFDARTGAPGIRCRRVADDLIPTGEGEIFVSPFSAEEGDFHQIHADLNAAQNLQQRLWSDFDISQIRLRCDWGEVDGELVLIPRLTGKRTADSYSNKVFYTNTGVTYYEREREKLSEEEAELLVEADEAREKSVVLmRDPSGIINRGNWTRQKEFWSmVNQRIEGYLVKQIRSR 1115
                                    11   |    21        31        41        51 ||     66        76        86        96       106       116       126       175       185     | 195   |   205       215    |  225  ||   235       245       255       265       275 ||    299       309       319       329       339       349       359       369      |379       389       399       409       419       429       439   |   449       459       469       479       489 |||   502       512       522       532       542       552       562    |  572       582       592       602       612       622       632       642       652       662       672       682 |     692       702       712       722   |   732       742       752       762       772       782       792       802       812     | 822       832       842       852       862     | 872       882       892|      902       912  ||   954       964       974       984       994      1004      1014      1024      1034      1054      1064      1074   |  1084      1094    | 1104      1114 
                                        15-MSE                                53|                                                                        134|              191-MSE 199-MSE              220-MSE 228-MSE                                       274-MSE                                                                                 376-MSE                                                            443-MSE                                         491-MSE                                                                  567-MSE                                                                                                              684-MSE                     712-MSE       726-MSE                                                                                     818-MSE                                           868-MSE                  893-MSE               915|                                                                                           1043|                    1078-MSE             1099-MSE            
                                                                               59                                                                         174                                                    229-MSE                                         277|                                                                                                                                                                                                     492|                                                                                                                                                                                                                                                                                                                                                                                                                                 948                                                                                            1054                                                             
                                                                                                                                                                                                                                                                  292                                                                                                                                                                                                      496                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:DNA/RNA  Length:60
                                                                                             
                5wqe B    1 GUCUAGAGGACAGACGGGUGUGCCAAUGGCCACUUCAGGUGGCAGCCCGUGGCACGAGAA   96
                                    10  ||    29        39    ||  51   ||   86        96
                                       13|                   44|      55|  62|          
                                        23                    47       58   86
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WQE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WQE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WQE)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5WQE)

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Asymmetric/Biological Unit
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  Cis Peptide Bonds
    Ala A:903 - Arg A:904   [ RasMol ]  
    Arg A:830 - Gly A:831   [ RasMol ]  
    Asp A:828 - Glu A:829   [ RasMol ]  
    Gln A:676 - Pro A:677   [ RasMol ]  
    Glu A:353 - Asp A:354   [ RasMol ]  
    Glu A:46 - Asn A:47   [ RasMol ]  
    Glu A:852 - Tyr A:853   [ RasMol ]  
    Glu A:968 - Gly A:969   [ RasMol ]  
    Gly A:755 - Asn A:756   [ RasMol ]  
    Gly A:87 - Pro A:88   [ RasMol ]  
    Gly A:957 - Glu A:958   [ RasMol ]  
    Lys A:1019 - Arg A:1020   [ RasMol ]  
    Lys A:188 - Pro A:189   [ RasMol ]  
    Ser A:660 - Glu A:661   [ RasMol ]  
    Ser A:851 - Glu A:852   [ RasMol ]  
    Ser A:965 - Ala A:966   [ RasMol ]  
    Thr A:1017 - Gly A:1018   [ RasMol ]  
    Thr A:330 - Arg A:331   [ RasMol ]  
    Thr A:905 - Gly A:906   [ RasMol ]  
 

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        C2C1_ALIAG | T0D7A2: 5u30 5u31 5u33 5u34

(-) Related Entries Specified in the PDB File

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