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(-) Description

Title :  CRYSTAL STRUCTURE OF AACC2C1-SGRNA BINARY COMPLEX
 
Authors :  H. Yang, P. Gao, K. R. Rajashankar, D. J. Patel
Date :  01 Dec 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.26
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Type V Crispr-Cas Endonculease: C2C1: Structure: Binary Complex With Sgrna: Ternary Complex With Added Dna: Ruvc Catalytic Pocket: Sequence-Specific Pam Recognition: Genome Editing Tool, Hydrolase- Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, P. Gao, K. R. Rajashankar, D. J. Patel
Pam-Dependent Target Dna Recognition And Cleavage By C2C1 Crispr-Cas Endonuclease.
Cell V. 167 1814 2016
PubMed-ID: 27984729  |  Reference-DOI: 10.1016/J.CELL.2016.11.053

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED ENDONUCLEASE C2C1
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET-SUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CRISPR-ASSOCIATED ENDONUCLEASE AACC2C1
    Gene: C2C1, N007_06525
    Mutation: YES
    Organism Scientific: ALICYCLOBACILLUS ACIDOTERRESTRIS
    Organism Taxid: 1356854
    Strain: ATCC 49025 / DSM 3922 / CIP 106132 / NCIMB 13137 / GD3B
    Synonym: AACC2C1
 
Molecule 2 - SGRNA
    Chains: B
    Engineered: YES
    Organism Scientific: ALICYCLOBACILLUS ACIDOTERRESTRIS
    Organism Taxid: 1450
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5U34)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5U34)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5U34)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U34)

(-) Exons   (0, 0)

(no "Exon" information available for 5U34)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:960
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhh........hhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhh..................eee.........eeee.........eeee..eeee....eeee..eeee.....hhh.eee.......eeeeee..eeeeeeeeeeeeee.....eeeeeee.hhhhhh....hhhhh.eeee....eeee...hhhhhhhhh.....hhhhhhhh..eeeeee......eeeeeeeeee..........ee.......eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee...eeee......eeeee...........hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.................eee.....hhhhhhhhhh...........ee.....eeeee.......eeeeehhhhhhhhhhhhhhh..hhhhh.eeeee........eee...hhhhhhhh...eeee....eeeee...........eee.....hhhhhheeehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5u34 A    1 mAVKSIKVKLRLDDmPEIRAGLWKLHKEVNAGVRYYTEWLSLLRQENLYRRCDKTAEECKAELLERLRARQVENGHRGPAGSDDELLQLARQLYELLVPQAIGAKGDAQQIARKFLSPLARTADVLRALADFGLKPLmRVYTDSEmSSVEWKPLRKGQAVRTWDRDmFQQAIERmmSWESWNQRVGQEYAKLVEQKNRFEQKNFVGQEHLVHLVNQLQQDmKEASVTGRALRGSDKVFEKWGKLAPDAPFDLYDAEIKNVQRRNTRRFGSHDLFAKLAEPEYQALWREDASFLTRYAVYNSILRKLNHAKmFATFTLPDATAHPIWTRFDKLGGNLHQYTFLFNEFGERRHAIRFHKLLKVENGVAREVDDVTVPISmSEQLDNLLPRDPNEPIALYFRDYGAEQHFTGEFGGAKIQCRRYLNVSVRVQSQSEARGERRPPYAAVFRLVGDNHRAFVHFDKLSDYLAEHPDDGKLGSEGLLSGLRVmSVDLGLRTSASISVFRVARKDELKGRVPFFFPIKGNDNLVAVHERSQLLKLPGETESKDLRAIREERQRTLRQLRTQLAYLRLLVRCGSEDVGRRERSWAKLIANHmTPDWREAFENELQKLKSDAVYESVRRVWRHmGKQVRDWRKDVRSGERPKIRGYAKDVVGGNSIEQIEYLERQYKFLKSWSFFRFAITLREHIDHAKEDRLKKLADRIImEALGYVYALKGKWVAKYPPCQLILLAELSEYQFNNDRPPSENNQLmQWSHRGVFQELINQAQVHDLLVGTmYAAFSSRFDARTGAPGIRCRRVPPWWLNKFVVEHTLDACPLRADDLIPTGEGEIFVSPFSAEEGDFHQIHADLNAAQNLQQRLWSDFDISQIRLRCDWGEVDGELVLIPRLTGKRTADSYSNKVFYTNTGVTYYEREEADEAREKSVVLmRDPSGIINRGNWTRQKEFWSmVNQRIEGYLVKQIRS 1114
                            |       10    |   20        30        40        50||      69        79        89        99       109       119       129|      183       193     | 203       213      |223    || 233       243       253       263       273|   || 295       305       315       325       335       345       355       365       375|      385       395       405       415       425       435       445       455       465       475       485|      510       520       530       540       550       560      |570       580       590|      604       614       624       634       644       654       664       674|  |   690       700||     721    |  731       741       751       761       771     ||795       805       815  |    825 ||    839       849       859       869       879       889   |   899       909      |931       941       951       961       971       981       991      1001      1011      1021      1031      1041||    1074   |  1084      1094    | 1104      1114
                            |            15-MSE                              51|                                                                 129|              191-MSE 199-MSE              220-MSE 228-MSE                                       274-MSE|                                                                                  376-MSE                                                            443-MSE                                   485|                                                               567-MSE                590|                                                                            674|  |              701|          726-MSE                                            777|                       818-MSE  827|                                 868-MSE                  893-MSE                916|                                                                                                             1042|        1078-MSE             1099-MSE           
                            1-MSE                                             61                                                                  174                                                    229-MSE                                           291                                                                                                                                                                                                501                                                                                       595                                                                             681  |               713                                                              792                                 832                                                                                  929                                                                                                              1066                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           684-MSE                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:RNA  Length:78
                                                                                                               
                5u34 B    0 GGUCUAGAGGACAGAAACGGGUGUGCCAAUGGCCACUUUCCAGGUGGCAAAGCCCGUUGAGCUGAAGUGGCACCAGAA   96
                                     9     || 26        36        46        56        66  ||    88        
                                          15|                                            69|              
                                           23                                             82
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U34)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5U34)

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  5u34
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C2C1_ALIAG | T0D7A2: 5u30 5u31 5u33 5wqe

(-) Related Entries Specified in the PDB File

5u30 5u31 5u33