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(-) Description

Title :  THE 2.4A CRYSTAL STRUCTURE OF OMPA DOMAIN OF OMPA FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. 14028S
 
Authors :  K. Tan, R. Wu, R. Jedrzejczak, J. Adkins, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg), Program For The Characterization Secreted Effector Proteins (Pcsep)
Date :  05 Apr 17  (Deposition) - 19 Apr 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Program For The Characterization Of Secreted Effector Proteins, Pcsep, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, R. Wu, R. Jedrzejczak, J. Adkins, A. Joachimiak
The 2. 4A Crystal Structure Of Ompa Domain Of Ompa From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str 14028S
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PALSMID
    Gene: OMPA, STM14_1214
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN 14028S / SGSC 2262)
    Organism Taxid: 588858
    Strain: 14028S / SGSC 2262

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO47Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:253 , GLN A:254binding site for residue SO4 A 401
2AC2SOFTWARELYS A:210 , SER A:211 , THR A:212binding site for residue SO4 A 402
3AC3SOFTWAREARG A:281 , ASN A:287binding site for residue SO4 A 403
4AC4SOFTWAREASN A:207 , PHE A:208 , HOH A:521binding site for residue SO4 A 404
5AC5SOFTWAREARG A:300 , PHE B:208 , ASN B:209 , ARG B:260 , ARG B:311 , HOH B:502 , HOH B:506 , HOH B:507 , HOH B:516binding site for residue SO4 B 401
6AC6SOFTWARESER B:249 , ASP B:250binding site for residue SO4 B 402
7AC7SOFTWARELYS B:210 , SER B:211 , THR B:212 , LYS B:259binding site for residue SO4 B 403

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:294 -A:306
2B:294 -B:306

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys B:298 -Pro B:299

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VES)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VES)

(-) Exons   (0, 0)

(no "Exon" information available for 5VES)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhh.......hhhhhhhhhhhhhhhhh......eeeeeee...........hhhhhhhhhhhhhhhhhh.hhh.eeeeeee..............hhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ves A 194 QTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGmGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGV 320
                                   203       213       223       233       243       253       263       273       283       293       303       313       
                                                                                                                   283-MSE                                 


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhh.......hhhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee................hhhhhhhhhh...eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ves B 194 QTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGmGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGVK 321
                                   203       213       223       233       243       253       263       273       283       293       303       313        
                                                                                                                   283-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VES)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VES)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VES)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5VES)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0F6AZN3_S | A0A0F6AZN3: 4erh

(-) Related Entries Specified in the PDB File

4erh HIGHER RESOLUTION LIMIT RELATED ID: MCSG-APC101566 RELATED DB: TARGETTRACK