4ERH - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF OMPA DOMAIN OF OMPA FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. 14028S

Authors :   K. Tan, R. Wu, R. Jedrzejczak, J. Adkins, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg), Program For The Characterization Secreted Effector Proteins (Pcsep)

Date :   20 Apr 12 (Deposition) - 02 May 12 (Release) - 01 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.52

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Program For The Characterization Of Secreted Effector Proteins, Pcsep, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, R. Wu, R. Jedrzejczak, J. Adkins, A. Joachimiak
The Crystal Structure Of Ompa Domain Of Ompa From Salmonell Enterica Subsp. Enterica Serovar Typhimurium Str. 14028S
To Be Published
PubMed: search

Molecule 1 - OUTER MEMBRANE PROTEIN A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 205-349
	Gene	:	OMPA, STM14_1214
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. 14028S
	Organism Taxid	:	588858

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:245 , ILE A:247 , GLY A:248 , GLU A:285 , LYS B:210	BINDING SITE FOR RESIDUE GOL A 401
2	AC2	SOFTWARE	ASN A:253 , GLN A:254 , HOH A:527	BINDING SITE FOR RESIDUE SO4 A 402
3	AC3	SOFTWARE	LYS A:210 , SER A:211 , THR A:212 , HOH A:525	BINDING SITE FOR RESIDUE SO4 A 403
4	AC4	SOFTWARE	LYS B:210 , SER B:211 , THR B:212	BINDING SITE FOR RESIDUE GOL B 401
5	AC5	SOFTWARE	SER B:249 , ASP B:250	BINDING SITE FOR RESIDUE GOL B 402
6	AC6	SOFTWARE	ARG A:300 , PHE B:208 , ASN B:209 , ARG B:260 , ARG B:311 , HOH B:506	BINDING SITE FOR RESIDUE SO4 B 403

Asymmetric Unit

No.	Residues
1	A:294	-	A:306
2	B:294	-	B:306

Asymmetric Unit

No.	Residues
1	Lys B:298	-	Pro B:299

(no "SAP(SNP)/Variant" information available for 4ERH)

(no "PROSITE Motif" information available for 4ERH)

(no "Exon" information available for 4ERH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains d4erha_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeehhhhh.......hhhhhhhhhhhhhhhh.......eeeeeee...........hhhhhhhhhhhhhhhh...hhh.eeeeeee..............hhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4erh A 192 EVQTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGmGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGV 320
                                   201       211       221       231       241       251       261       271       281 |     291       301       311         
                                                                                                                     283-MSE

Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4erhb_ B: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhh.......hhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee................hhhhhhhhhh...eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4erh B 194 QTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGmGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGVK 321
                                   203       213       223       233       243       253       263       273       283       293       303       313        
                                                                                                                   283-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Bacillus chorismate mutase-like (324)

Superfamily: OmpA-like (17)

Family: automated matches (11)

Protein domain: automated matches (11)

Salmonella enterica [TaxId: 588858] (1)

1a	d4erha_	A:
1b	d4erhb_	B:

(no "CATH Domain" information available for 4ERH)

(no "Pfam Domain" information available for 4ERH)

Asymmetric Unit(hide GO term definitions)

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Ligands, Modified Residues, Ions (3, 8)

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SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

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