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(-) Description

Title :  OTU PROTEASE OF CRIMEAN CONGO HEMORRHAGIC FEVER VIRUS BOUND TO UBIQUITIN VARIANT CC.1
 
Authors :  B. Khare, B. L. Mark
Date :  14 Mar 17  (Deposition) - 10 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Ovarian Tumor Domain Protease, Deubiquitinase, Ubiquitin Variant, Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. A. Bailey-Elkin, R. C. M. Knaap, B. Khare, T. J. Dalebout, G. G. Johnson, P. B. Van Kasteren, N. J. Mcleish, J. Gu, W. He, M. Kikkert, B. L. Mark, S. S. Sidhu
Potent And Selective Inhibition Of Pathogenic Viruses By Engineered Ubiquitin Variants.
Plos Pathog. V. 13 06372 2017
PubMed-ID: 28542609  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006372

(-) Compounds

Molecule 1 - RNA-DIRECTED RNA POLYMERASE L
    Chains: A, C
    EC Number: 3.4.19.12, 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Organism Common: CCHFV
    Organism Scientific: CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (STRAIN NIGERIA/IBAR10200/1970)
    Organism Taxid: 652961
    Other Details: NOTE: THE ACTIVE SITE CYS IS OXIDIZED TO SULFENIC ACID
    Strain: NIGERIA/IBAR10200/1970
    Synonym: PROTEIN L,LARGE STRUCTURAL PROTEIN,REPLICASE,TRANSCRIPTASE
 
Molecule 2 - UBIQUITIN VARIANT CC.1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CSX2Mod. Amino AcidS-OXY CYSTEINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CSX1Mod. Amino AcidS-OXY CYSTEINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CSX1Mod. Amino AcidS-OXY CYSTEINE

(-) Sites  (0, 0)

(no "Site" information available for 5V5I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V5I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V5I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V5I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V5I)

(-) Exons   (0, 0)

(no "Exon" information available for 5V5I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh..eeee..eeee....hhhh.eeee......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhh..eeeeee.....eeeeeee........eeeeee...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5v5i A   0 SMDFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNcFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQF 161
                                     9        19        29        39|       49        59        69        79        89        99       109       119       129       139       149       159  
                                                                   40-CSX                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 5v5i B   1 MQIFVKTLKGHVITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFALQQLEDGRTLSDYNIQKESNLHLVLRLGG  75
                                    10        20        30        40        50        60        70     


Chain C from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..eeee..eeee....hhhhheeee......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhh...eeeeee.....eeeeeee........eeeeee...eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v5i C   1 MDFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNcFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQF 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
                                                                  40-CSX                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeee.....................eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 5v5i D   1 MQIFVKTLKGHVITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFALQQLEDGRTLSDYNIQKESNLHLVLRLGG  75
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V5I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V5I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V5I)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        L_CCHFI | Q6TQR6: 3phu 3phw 3phx 3znh 5v5g 5v5h

(-) Related Entries Specified in the PDB File

5v5g 5v5h