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(-) Description

Title :  OTU PROTEASE OF CRIMEAN CONGO HEMORRHAGIC FEVER VIRUS BOUND TO UBIQUITIN VARIANT CC.2
 
Authors :  B. Khare, B. L. Mark
Date :  14 Mar 17  (Deposition) - 10 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ovarian Tumor Domain Protease, Deubiquitinase, Ubiquitin Variant, Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. A. Bailey-Elkin, R. C. M. Knaap, B. Khare, T. J. Dalebout, G. G. Johnson, P. B. Van Kasteren, N. J. Mcleish, J. Gu, W. He, M. Kikkert, B. L. Mark, S. S. Sidhu
Potent And Selective Inhibition Of Pathogenic Viruses By Engineered Ubiquitin Variants.
Plos Pathog. V. 13 06372 2017
PubMed-ID: 28542609  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1006372

(-) Compounds

Molecule 1 - RNA-DIRECTED RNA POLYMERASE L
    Chains: A
    EC Number: 3.4.19.12, 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: CCHFV
    Organism Scientific: CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (STRAIN NIGERIA/IBAR10200/1970)
    Organism Taxid: 652961
    Strain: NIGERIA/IBAR10200/1970
    Synonym: PROTEIN L,LARGE STRUCTURAL PROTEIN,REPLICASE,TRANSCRIPTASE
 
Molecule 2 - UBIQUITIN VARIANT CC.2
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NA1Ligand/IonSODIUM ION
4ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:16 , GLU A:78 , THR A:102 , SER A:106 , PHE A:133 , HOH A:360binding site for residue NA A 201
2AC2SOFTWAREHIS A:56 , HIS A:59binding site for residue ZN A 202
3AC3SOFTWAREARG A:80 , LEU A:81 , VAL A:82 , GLU B:24 , LYS B:27 , ASP B:39 , GLU B:51 , ASP B:52 , HOH B:201 , HOH B:204 , HOH B:209 , HOH B:239binding site for residue EPE B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V5H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V5H)

(-) Exons   (0, 0)

(no "Exon" information available for 5V5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..eeee..eeee....hhhhheeee......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh..eeeeee.....eeeeeee........eeeeee...eeeeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v5h A   0 SMDFLRSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNcFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFE 162
                                     9        19        29        39|       49        59        69        79        89        99       109       119       129       139       149       159   
                                                                   40-CSD                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeee....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 5v5h B  -1 DKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIRKQSNLYLLWRLGGWK  77
                                     8        18        28        38        48        58        68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V5H)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        L_CCHFI | Q6TQR6: 3phu 3phw 3phx 3znh 5v5g 5v5i

(-) Related Entries Specified in the PDB File

5v5g 5v5i