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(-) Description

Title :  STRUCTURE OF HUMAN T-COMPLEX PROTEIN 1 SUBUNIT EPSILON (CCT5) MUTANT HIS147ARG
 
Authors :  J. H. Pereira, R. P. Mcandrew, O. A. Sergeeva, C. Y. Ralston, J. A. King, P
Date :  24 Feb 17  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (4x)
Keywords :  Chaperonin Hexadecameric Complex Atp-Dependent Cct5 Gene, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Pereira, R. P. Mcandrew, O. A. Sergeeva, C. Y. Ralston, J. A. King, P. D. Adams
Structure Of The Human Tric/Cct Subunit 5 Associated With Hereditary Sensory Neuropathy.
Sci Rep V. 7 3673 2017
PubMed-ID: 28623285  |  Reference-DOI: 10.1038/S41598-017-03825-3

(-) Compounds

Molecule 1 - T-COMPLEX PROTEIN 1 SUBUNIT EPSILON
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CCT5, CCTE, KIAA0098
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TCP-1-EPSILON,CCT-EPSILON

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (4x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1ADP16Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:52 , GLY A:53 , ASP A:73 , GLY A:105 , THR A:106 , THR A:107 , GLY A:108 , GLY A:422 , CYS A:493 , LEU A:494 , VAL A:506 , GLU A:508 , MG A:602binding site for residue ADP A 601
2AC2SOFTWAREASP A:73 , ADP A:601binding site for residue MG A 602
3AC3SOFTWARESER B:51 , LEU B:52 , GLY B:53 , PRO B:54 , ASP B:73 , ASP B:104 , GLY B:105 , THR B:106 , THR B:107 , GLY B:108 , GLY B:422 , CYS B:493 , LEU B:494 , VAL B:506 , GLU B:508 , MG B:602binding site for residue ADP B 601
4AC4SOFTWAREASP B:104 , ADP B:601binding site for residue MG B 602
5AC5SOFTWARESER C:51 , LEU C:52 , GLY C:53 , ASP C:73 , GLY C:105 , THR C:106 , THR C:107 , GLY C:108 , GLY C:422 , CYS C:493 , LEU C:494 , VAL C:506 , GLU C:508 , MG C:602binding site for residue ADP C 601
6AC6SOFTWAREASP C:104 , ADP C:601binding site for residue MG C 602
7AC7SOFTWARESER D:51 , LEU D:52 , GLY D:53 , ASP D:73 , GLY D:105 , THR D:106 , THR D:107 , GLY D:108 , GLY D:422 , LEU D:494 , VAL D:506 , GLU D:508binding site for residue ADP D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UYZ)

(-) Cis Peptide Bonds  (29, 29)

Asymmetric Unit
No.Residues
1Glu A:200 -Arg A:201
2Arg A:323 -Trp A:324
3Gly A:338 -Gly A:339
4Arg A:344 -Phe A:345
5Ala A:350 -Glu A:351
6Asp A:492 -Cys A:493
7Val B:62 -Asp B:63
8Glu B:200 -Arg B:201
9Glu B:207 -Leu B:208
10Arg B:323 -Trp B:324
11Gly B:338 -Gly B:339
12Arg B:344 -Phe B:345
13Ala B:350 -Glu B:351
14Gly B:354 -Phe B:355
15Asp B:492 -Cys B:493
16Glu C:200 -Arg C:201
17Phe C:206 -Glu C:207
18Arg C:323 -Trp C:324
19Gly C:338 -Gly C:339
20Arg C:344 -Phe C:345
21Ala C:350 -Glu C:351
22Asp C:492 -Cys C:493
23Glu D:200 -Arg D:201
24Phe D:206 -Glu D:207
25Arg D:323 -Trp D:324
26Gly D:338 -Gly D:339
27Arg D:344 -Phe D:345
28Ala D:350 -Glu D:351
29Asp D:492 -Cys D:493

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5UYZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.......................hhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhee.......hhhhhhhhh.hhhhhhhhhhhhhhhh..............eee....hhhhh...................eee....eee..................hhhhhhhhhhhhhhhhhhhhhhhhh.....eee.......hhhhhhhh...........hhhhhhhhh....................eeeeee....eeeeee.......eee........hhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyz A  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIERLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533   
                                                                                                                                                                     170|                                                                                                                                                                                                  377|                                                                                                                                                          
                                                                                                                                                                      180                                                                                                                                                                                                   382                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.......................hhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhee.......hhhhhhhhh.hhhhhhhhhhhhhhhh..............eee....hhhhh...........................ee..................hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhhhh........hhhhhhhhhhhh....................eee.....eee.......eee........hhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyz B  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIERLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQETKDKMLVIEQCAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359 ||    374  ||   388       398       408       418       428       438       448       458       468       478       488       498       508       518       528        
                                                                                                                                                                     170|                                                                                                                                                                                  361|       377|                                                                                                                                                          
                                                                                                                                                                      180                                                                                                                                                                                   367        382                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.........................hhhhhh.....hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhee.......hhhhhhhhh..hhhhhhhhhhhhhhh.................hhhhh..........................eee..............ee...hhhhhhhhhhhhhhhhhhhhhhh......eee.......hhhhhhhh........hhhhhhhhhhhh....................eeeeee....eeeeee.................hhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyz C  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIERLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170|      189       199       209   ||  223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373  ||   388       398       408       418       428       438       448       458       468       478       488       498       508       518       528        
                                                                                                                                                                     170|                              213|                                                                                                                                                           376|                                                                                                                                                          
                                                                                                                                                                      180                               218                                                                                                                                                            382                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:459
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh........................hhhhhhhh....hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhee......hhhhhhh...hhhhhhhhhhhhhh..........................................eee................eehhhhhhhhhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhh............hhhhhhhh....................eeee...eeee..........hhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhh...hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyz D  29 MGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIERLDKISDSVLVDIKDTEPLIQTAHRQMAEIAVNAVLTVADMERRDVDFELIKVTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISDKMLVIEQAVTIFIHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIR 534
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168||     190       200       210||     230       240       250       260       270       280       290       300       310       320       330       340       350       360  ||   375||    |405       415       425       435       445       455       465       475       485       495       505       515       525         
                                                                                                                                                                      169|                          211|                                                                                                                                          363|    376|  387|                                                                                                                                   
                                                                                                                                                                       182                           222                                                                                                                                           369     382   403
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UYZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UYZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UYZ)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:350 - Glu A:351   [ RasMol ]  
    Ala B:350 - Glu B:351   [ RasMol ]  
    Ala C:350 - Glu C:351   [ RasMol ]  
    Ala D:350 - Glu D:351   [ RasMol ]  
    Arg A:323 - Trp A:324   [ RasMol ]  
    Arg A:344 - Phe A:345   [ RasMol ]  
    Arg B:323 - Trp B:324   [ RasMol ]  
    Arg B:344 - Phe B:345   [ RasMol ]  
    Arg C:323 - Trp C:324   [ RasMol ]  
    Arg C:344 - Phe C:345   [ RasMol ]  
    Arg D:323 - Trp D:324   [ RasMol ]  
    Arg D:344 - Phe D:345   [ RasMol ]  
    Asp A:492 - Cys A:493   [ RasMol ]  
    Asp B:492 - Cys B:493   [ RasMol ]  
    Asp C:492 - Cys C:493   [ RasMol ]  
    Asp D:492 - Cys D:493   [ RasMol ]  
    Glu A:200 - Arg A:201   [ RasMol ]  
    Glu B:200 - Arg B:201   [ RasMol ]  
    Glu B:207 - Leu B:208   [ RasMol ]  
    Glu C:200 - Arg C:201   [ RasMol ]  
    Glu D:200 - Arg D:201   [ RasMol ]  
    Gly A:338 - Gly A:339   [ RasMol ]  
    Gly B:338 - Gly B:339   [ RasMol ]  
    Gly B:354 - Phe B:355   [ RasMol ]  
    Gly C:338 - Gly C:339   [ RasMol ]  
    Gly D:338 - Gly D:339   [ RasMol ]  
    Phe C:206 - Glu C:207   [ RasMol ]  
    Phe D:206 - Glu D:207   [ RasMol ]  
    Val B:62 - Asp B:63   [ RasMol ]  
 
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        TCPE_HUMAN | P48643: 5uyx

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5uyx