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(-) Description

Title :  STRUCTURE OF HUMAN T-COMPLEX PROTEIN 1 SUBUNIT EPSILON (CCT5)
 
Authors :  J. H. Pereira, R. P. Mcandrew, O. A. Sergeeva, C. Y. Ralston, J. A. King, P
Date :  24 Feb 17  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (4x)
Keywords :  Chaperonin Hexadecameric Complex Atp-Dependent Cct5 Gene, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Pereira, R. P. Mcandrew, O. A. Sergeeva, C. Y. Ralston, J. A. King, P. D. Adams
Structure Of The Human Tric/Cct Subunit 5 Associated With Hereditary Sensory Neuropathy.
Sci Rep V. 7 3673 2017
PubMed-ID: 28623285  |  Reference-DOI: 10.1038/S41598-017-03825-3

(-) Compounds

Molecule 1 - T-COMPLEX PROTEIN 1 SUBUNIT EPSILON
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CCT5, CCTE, KIAA0098
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TCP-1-EPSILON,CCT-EPSILON

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (4x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1ADP16Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:52 , GLY A:53 , ASP A:104 , GLY A:105 , THR A:106 , THR A:107 , GLY A:422 , CYS A:493 , VAL A:506 , GLU A:508 , LYS A:513binding site for residue ADP A 601
2AC2SOFTWARESER B:51 , LEU B:52 , GLY B:53 , ASP B:104 , GLY B:105 , THR B:106 , THR B:107 , GLY B:108 , GLY B:422 , LEU B:462 , CYS B:493 , LEU B:494 , VAL B:506 , GLU B:508binding site for residue ADP B 601
3AC3SOFTWARESER C:51 , LEU C:52 , GLY C:53 , GLY C:105 , THR C:106 , THR C:107 , GLY C:108 , GLY C:422 , CYS C:493 , GLU C:508binding site for residue ADP C 601
4AC4SOFTWARESER D:51 , LEU D:52 , GLY D:53 , ASP D:104 , GLY D:105 , THR D:106 , THR D:107 , GLY D:108 , GLY D:422 , CYS D:493 , LEU D:494 , VAL D:506 , GLU D:508binding site for residue ADP D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UYX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UYX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UYX)

(-) Exons   (0, 0)

(no "Exon" information available for 5UYX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:492
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......................hhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhee........hhhhhhhh..hhhhhhhhhhhhhhh............eeeee....hhhhh.....eee...........eeeee.eeee.............ee...hhhhhhhhhhhhhhhhhhhhhhhhh....eee.....hhhhhhhhhh....ee.......hhhhhhhh...ee......hhhhh..eeeeeeeee..eeeeeee....eeeee.....hhhhhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uyx A  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369      |384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534  
                                                                                                                                                                     170|                                                                                                                                                                                                 376|                                                                                                                                                          
                                                                                                                                                                      180                                                                                                                                                                                                  382                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......................hhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhee........hhhhhh...hhhhhhhhhhhhhhhh.............eeeeee.......eee.eeee............eeeeee..................ee.hhhhhhhhhhhhhhhhhhhhhhhhh.....ee.......hhhhhhhhh...ee...hhhhhhhhhhhh...........hhhhheeeeee..eeee.....eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyx B  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQDKMLVIEQAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170|      189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359||     382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532    
                                                                                                                                                                     170|                                                                                                                                                                                 360|    376|                                                                                                                                                          
                                                                                                                                                                      180                                                                                                                                                                                  369     382                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..........hhhhhhhhh...hhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhee.......hhhhhh.....hhhhhhhhhhhhhhh............eeee.hhhhheee..eee...........eee..eee....................hhhhhhhhhhhhhhhhhhhhhhhhh.....ee....hhhhhhhhhhhh...ee.......hhhhhhhhh..............eeeeeeeeeee....eeeeeeee..eeee..........hhhhhhhhhhhhhhhhhhh.ee....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...............hhhhhh...hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uyx C  31 LEALKSHIMAAKAVANTMRTSLGPNGLNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 536
                                    40        50      ||74        84        94       104       114       124       134       144       154       164     ||183       193       203       213|      227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532    
                                                     57|                                                                                               170|                              213|                                                                                                                                                           376|                                                                                                                                                          
                                                      72                                                                                                180                               218                                                                                                                                                            382                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh........................hhhhhhhh....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhee....hhhhhhhhh...hhhhhhhhhhhhhh............ee..eee..eee...........eeeee.eeee.................hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhh..ee...hhhhhhhhhhhhh.................eeeeee...eeee....eeee...hhhhhhhhhhh.ee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uyx D  31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAHRQMAEIAVNAVLTVADMERRDVDFELIKVTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISDKMLVIEQAVTIFIHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMIL 528
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       182       192       202       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362||     382    || 407       417       427       437       447       457       467       477       487       497       507       517       527 
                                                                                                                                                                    169|                          211|                                                                                                                                          363|    376|  387|                                                                                                                             
                                                                                                                                                                     182                           222                                                                                                                                           369     382   403
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UYX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UYX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UYX)

(-) Gene Ontology  (27, 27)

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