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(-) Description

Title :  SERIAL MILLISECOND CRYSTALLOGRAPHY OF MEMBRANE AND SOLUBLE PROTEIN MICRO-CRYSTALS USING SYNCHROTRON RADIATION
 
Authors :  J. M. Martin-Garcia, C. E. Conrad, G. Nelson, N. Stander, N. A. Zatsepin L. Zhu, J. Geiger, E. Chun, D. Kissick, M. C. Hilgart, C. Ogata, A. Ishch N. Nagaratnam, S. Roy-Chowdhury, J. Coe, G. Subramanian, A. Schaffer G. Ketawala, N. Venugopalan, S. Xu, S. Corcoran, D. Ferguson, U. Weier J. C. H. Spence, V. Cherezov, P. Fromme, R. F. Fischetti, W. Liu
Date :  20 Feb 17  (Deposition) - 24 May 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (6x)
Keywords :  Multi-Protein Cofactor Antenna Complex, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Martin-Garcia, C. E. Conrad, G. Nelson, N. Stander, N. A. Zatsepin, J. Zook, L. Zhu, J. Geiger, E. Chun, D. Kissick, C. Ogata A. Ishchenko, N. Nagaratnam, S. Roy-Chowdhury, J. Coe, G. Subramanian, A. Schaffer, D. James, G. Ketawala, N. Venugopalan, S. Xu, S. Corcoran, D. Ferguson, U. Weierstall, J. C. H. Spence, V. Cherezov, P. Fromme, R. F. Fischetti, W. Liu
Serial Millisecond Crystallography Of Membrane And Soluble Protein Micro-Crystals Using Synchrotron Radiation
Iucrj V. 4 439 2017
PubMed: search  |  Reference-DOI: 10.1107/S205225251700570X

(-) Compounds

Molecule 1 - C-PHYCOCYANIN ALPHA CHAIN
    Chains: A
    Engineered: YES
    Expression System: THERMOSYNECHOCOCCUS ELONGATUS
    Expression System Taxid: 146786
    Gene: CPCA, TLR1958
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 2 - C-PHYCOCYANIN BETA CHAIN
    Chains: B
    Engineered: YES
    Expression System: THERMOSYNECHOCOCCUS ELONGATUS
    Expression System Taxid: 146786
    Gene: CPCB, TLR1957
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (6x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CYC3Ligand/IonPHYCOCYANOBILIN
2MEN1Mod. Amino AcidN-METHYL ASPARAGINE
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1CYC18Ligand/IonPHYCOCYANOBILIN
2MEN6Mod. Amino AcidN-METHYL ASPARAGINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:59 , THR A:66 , SER A:72 , GLN A:73 , TYR A:74 , ALA A:75 , GLY A:80 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , ILE A:118 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , ARG B:57 , TYR B:74 , THR B:75 , ASN B:76binding site for residue CYC A 200
2AC2SOFTWAREMEN B:72 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , MET B:86 , ILE B:88 , LEU B:113 , THR B:116 , LEU B:120 , THR B:122 , VAL B:127binding site for residue CYC B 201
3AC3SOFTWAREASP A:28 , ARG A:33 , GLN A:145 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ALA B:142 , ASN B:143 , ILE B:148 , THR B:149 , CYS B:153 , MET B:157binding site for residue CYC B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UVK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UVK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UVK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UVK)

(-) Exons   (0, 0)

(no "Exon" information available for 5UVK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uvk A   1 MKTPITEAIAAADTQGRFLSNTELQAVDGRFKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGLSEINSTFDLSPSWYIEALKYIKANHGLTGQAAVEANAYIDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uvk B   1 MLDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKMKDAAIAIANDPNGITPGDCSALMSEIAGYFDRAAAAVA 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UVK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UVK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UVK)

(-) Gene Ontology  (7, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHCA_THEEB | P50032: 1jbo 1ktp 3l0f 4q70 4z8k 4ziz
        PHCB_THEEB | P50033: 1i7y 1jbo 1ktp 1on7 3l0f 4q70 4z8k 4ziz

(-) Related Entries Specified in the PDB File

5uvi
5uvj RELATED ID: 5UVJL RELATED DB: PDB