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(-) Description

Title :  PHYCOCYANIN STRUCTURE FROM T. ELONGATUS AT 2.5-A FROM XFEL USING A VISCOUS DELIVERY MEDIUM FOR SERIAL FEMTOSECOND CRYSTALLOGRAPHY
 
Authors :  R. Fromme, S. Basu, P. Fromme
Date :  09 Apr 15  (Deposition) - 12 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Phycocyanin, T. Elongatus, Phycobiliprotein, Sfx, Xfel, Agarose, Viscous Delivery Medium. , Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. E. Conrad, S. Basu, D. James, D. Wang, A. Schaffer, S. Roy-Chowdhury N. A. Zatsepin, A. Aquila, J. Coe, C. Gati, M. S. Hunter, J. E. Koglin, C. Kupitz, G. Nelson, G. Subramanian, T. A. White, Y. Zhao, J. Zook, S. Boutet, V. Cherezov, J. C. Spence, R. Fromme, U. Weierstall, P. Fromme
A Novel Inert Crystal Delivery Medium For Serial Femtosecon Crystallography.
Iucrj V. 2 421 2015
PubMed-ID: 26177184  |  Reference-DOI: 10.1107/S2052252515009811

(-) Compounds

Molecule 1 - C-PHYCOCYANIN ALPHA CHAIN
    Chains: A
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 2 - C-PHYCOCYANIN BETA CHAIN
    Chains: B
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CYC3Ligand/IonPHYCOCYANOBILIN
2MEN1Mod. Amino AcidN-METHYL ASPARAGINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1CYC9Ligand/IonPHYCOCYANOBILIN
2MEN3Mod. Amino AcidN-METHYL ASPARAGINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:72 , GLN A:73 , TYR A:74 , ALA A:75 , GLY A:80 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , ILE A:118 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , HOH A:308 , ARG B:57 , ILE B:67 , TYR B:76 , THR B:77 , ASN B:78binding site for residue CYC A 201
2AC2SOFTWARELEU B:59 , MEN B:72 , ALA B:75 , ARG B:79 , ARG B:80 , ALA B:83 , CYS B:84 , ARG B:86 , ASP B:87 , ILE B:90 , ARG B:110 , LEU B:122 , THR B:124 , SER B:128 , HOH B:314binding site for residue CYC B 201
3AC3SOFTWAREASN A:21 , LEU A:24 , GLN A:25 , ASP A:28 , ASN B:35 , LYS B:36 , ASP B:39 , ASN B:145 , ASP B:146 , ILE B:150 , THR B:151 , PRO B:152 , GLY B:153 , CYS B:155 , SER B:160 , ALA B:163 , HOH B:302 , HOH B:308 , HOH B:322binding site for residue CYC B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z8K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z8K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z8K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z8K)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z8K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z8k A   1 MKTPITEAIAAADTQGRFLSNTELQAVDGRFKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARDIGYYLRMITYCLVAGGTGPMDEYLIAGLSEINSTFDLSPSWYIEALKYIKANHGLTGQAAVEANAYIDYAINALS 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      162       172  
                                                                                                                                                                     140|    150|             
                                                                                                                                                                      143     161             


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z8k B   1 MLDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKMKDAAIAIANDPNGITPGDCSALMSEIAGYFDRAAAAVA 174
                                    10        20        30        40        50        60        70 ||     82        92       102       112       122       132       142       152       162       172  
                                                                                                  72-MEN                                                                                                
                                                                                                   75
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z8K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z8K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z8K)

(-) Gene Ontology  (7, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHCA_THEEB | P50032: 1jbo 1ktp 3l0f 4q70 4ziz 5uvk
        PHCB_THEEB | P50033: 1i7y 1jbo 1ktp 1on7 3l0f 4q70 4ziz 5uvk

(-) Related Entries Specified in the PDB File

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