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(-) Description

Title :  HUMAN BFL-1 COVALENTLY CROSS-LINKED TO AN ELECTROPHILIC VARIANT OF A BFL-1-SPECIFIC SELECTED PEPTIDE
 
Authors :  J. M. Jenson, R. A. Grant, A. E. Keating
Date :  17 Feb 17  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apoptosis Regulatory Proteins, Electrophile, Protein Binding, Protein Structure, Proto-Oncogene, Specificity, Bcl2A1, Bcl2 Related Protein A1, Peptide Inhibitor, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Jenson, J. A. Ryan, R. A. Grant, A. Letai, A. E. Keating
Epistatic Mutations In Puma Bh3 Drive An Alternate Binding Mode To Potently And Selectively Inhibit Anti-Apoptotic Bfl-1.
Elife V. 6 2017
PubMed-ID: 28594323  |  Reference-DOI: 10.7554/ELIFE.25541

(-) Compounds

Molecule 1 - BCL-2-RELATED PROTEIN A1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 1-151
    GeneBCL2A1, BCL2L5, BFL1, GRS, HBPA1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBCL-2-LIKE PROTEIN 5,BCL2-L-5,HEMOPOIETIC-SPECIFIC EARLY RESPONSE PROTEIN,PROTEIN BFL-1,PROTEIN GRS
 
Molecule 2 - BFL-1-SPECIFIC SELECTED PEPTIDE
    ChainsB
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1AKR1Mod. Amino AcidACRYLIC ACID
2SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:10 , ARG A:11 , GLN A:14 , LYS A:116binding site for residue SO4 A 201
2AC2SOFTWAREARG A:105 , GLN A:106binding site for residue SO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UUP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UUP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UUP)

(-) Exons   (0, 0)

(no "Exon" information available for 5UUP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uup A   0 GMTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWENGFVKKFEPK 151
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149  

Chain B from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 5uup B   1 xGVREIAYGLRRAADDVNAQVER  23
                            |       10        20   
                            1-AKR                  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UUP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UUP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UUP)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2LA1_HUMAN | Q165482vm6 3i1h 3mqp 4zeq 5uuk 5uul

(-) Related Entries Specified in the PDB File

5uuk 5uul 5uum