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(-) Description

Title :  VSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004
 
Authors :  L. Hanke, K. E. Knockenhauer, H. L. Ploegh, T. U. Schwartz
Date :  20 Jan 17  (Deposition) - 19 Apr 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.47
Chains :  Asym. Unit :  A,B,C,D,E,R,a,b,c,d,e
Biol. Unit 1:  A,B,C,D,E,R,a,b,c,d,e  (2x)
Keywords :  Vesicular Stomatitis Virus, Nucleoprotein, Inhibitory Vhh, Antiviral, Viral Protein-Rna-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Hanke, F. I. Schmidt, K. E. Knockenhauer, B. Morin, S. P. Whelan, T. U. Schwartz, H. L. Ploegh
Vesicular Stomatitis Virus N Protein-Specific Single-Domain Antibody Fragments Inhibit Replication.
Embo Rep. V. 18 1027 2017
PubMed-ID: 28396572  |  Reference-DOI: 10.15252/EMBR.201643764

(-) Compounds

Molecule 1 - ANTI-VESICULAR STOMATITIS VIRUS N VHH
    Chains: d, c, b, a, e
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: ALPACA
    Organism Scientific: VICUGNA PACOS
    Organism Taxid: 30538
    Other Details: GGLPETGGHHHHHH SORTASE A RECOGNITION MOTIF AND HIS TAG.
 
Molecule 2 - NUCLEOCAPSID
    Chains: D, C, B, A, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: VESICULAR STOMATITIS INDIANA VIRUS
    Organism Taxid: 11277
    Synonym: NUCLEOCAPSID PROTEIN
 
Molecule 3 - RNA (45-MER)
    Chains: R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric Unit : ABCDERabcde
Biological Unit 1 (2x): ABCDERabcde

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5UKB)

(-) Sites  (0, 0)

(no "Site" information available for 5UKB)

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1a:22 -a:96
2b:22 -b:96
3c:22 -c:96
4d:22 -d:96
5e:22 -e:96

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UKB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UKB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UKB)

(-) Exons   (0, 0)

(no "Exon" information available for 5UKB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......ee.............hhhhhh.....eeee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee..eeee............eeee..................hhhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb A   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111  ||   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         
                                                                                                                                          114|                                                                                                                                                                                                                                                                                                                 
                                                                                                                                           117                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......ee.............hhhhhh.....eeee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee..eeee............eeee..................hhhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb B   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111  ||   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         
                                                                                                                                          114|                                                                                                                                                                                                                                                                                                                 
                                                                                                                                           117                                                                                                                                                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.............hhhhhh.....eeee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee..eeee............eeee..................hhhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb C   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111  ||   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         
                                                                                                                                          114|                                                                                                                                                                                                                                                                                                                 
                                                                                                                                           117                                                                                                                                                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.............hhhhhh.....eeee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee..eeee............eeee..................hhhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhh................................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb D   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111  ||   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         
                                                                                                                                          114|                                                                                                                                                                                                                                                                                                                 
                                                                                                                                           117                                                                                                                                                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee.............hhhhhh.....eeee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee..eeee............eeee..................hhhhhhhhhhhhh.........hhhhhhhhhhhhh.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhh................................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb E   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111  ||   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413         
                                                                                                                                          114|                                                                                                                                                                                                                                                                                                                 
                                                                                                                                           117                                                                                                                                                                                                                                                                                                                 


Chain R from PDB  Type:RNA  Length:45
                                                                             
                 5ukb R   1 UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU  45
                                    10        20        30        40     


Chain a from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..ee.......eeeeeeee......eeeeeee......eeeeee......eee.hhhh..eee..........eee...hhhhheeeeeeee.............ee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb a   1 QVQLVESGGGLVQAGGSLTLSCVASGRPFRNYRLGWFRQAPGKEREFVAAINWGGVITNYADSVKGRFTISRDDAKNTVYLQMNSLKPEETAVYYCAAFDSTGSPIVRDNYEYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain b from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..ee.......eeeeeeee......eeeeeee......eeeeee......eee.hhhh..eee..........eee...hhhhheeeeeeee.............ee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb b   1 QVQLVESGGGLVQAGGSLTLSCVASGRPFRNYRLGWFRQAPGKEREFVAAINWGGVITNYADSVKGRFTISRDDAKNTVYLQMNSLKPEETAVYYCAAFDSTGSPIVRDNYEYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain c from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..ee.......eeeeeeee......eeeeeee......eeeeee......eee.hhhh..eee..........eee...hhhhheeeeeeee.............ee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb c   1 QVQLVESGGGLVQAGGSLTLSCVASGRPFRNYRLGWFRQAPGKEREFVAAINWGGVITNYADSVKGRFTISRDDAKNTVYLQMNSLKPEETAVYYCAAFDSTGSPIVRDNYEYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain d from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..ee.......eeeeeeee......eeeeeee......eeeeee......eee.hhhh..eee..........eee...hhhhheeeeeeee.............ee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb d   1 QVQLVESGGGLVQAGGSLTLSCVASGRPFRNYRLGWFRQAPGKEREFVAAINWGGVITNYADSVKGRFTISRDDAKNTVYLQMNSLKPEETAVYYCAAFDSTGSPIVRDNYEYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain e from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..ee.......eeeeeeee......eeeeeee......eeeeee......eee.hhhh..eee..........eee...hhhhheeeeeeee.............ee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ukb e   1 QVQLVESGGGLVQAGGSLTLSCVASGRPFRNYRLGWFRQAPGKEREFVAAINWGGVITNYADSVKGRFTISRDDAKNTVYLQMNSLKPEETAVYYCAAFDSTGSPIVRDNYEYWGQGTQVTV 122
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UKB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UKB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UKB)

(-) Gene Ontology  (1, 1)

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  A6H4P1_9RHAB | A6H4P1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A6H4P1_9RHAB | A6H4P1: 2qvj

(-) Related Entries Specified in the PDB File

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