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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYO-EM STRUCTURE OF THE TRANSCRIPTIONAL MEDIATOR
 
Authors :  K. -L. Tsai, X. Yu, S. Gopalan, T. -C. Chao, Y. Zhang, L. Florens, M. P. Was K. Murakami, R. C. Conaway, J. W. Conaway, F. Asturias
Date :  26 Nov 16  (Deposition) - 08 Mar 17  (Release) - 19 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.40
Chains :  Asym./Biol. Unit :  D,F,G,H,I,J,K,N,Q,R,S,T,U,V,2,3
Keywords :  Transcription, Transcriptional, Mediator, Head, Middle, Tail, Srb, Rna Polymerase Ii, Med (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. L. Tsai, X. Yu, S. Gopalan, T. C. Chao, Y. Zhang, L. Florens, M. P. Washburn, K. Murakami, R. C. Conaway, J. W. Conaway, F. J. Asturia
Mediator Structure And Rearrangements Required For Holoenzyme Formation.
Nature V. 544 196 2017
PubMed-ID: 28241144  |  Reference-DOI: 10.1038/NATURE21393

(-) Compounds

Molecule 1 - MEDIATOR COMPLEX SUBUNIT 14
    Chains: N
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 2 - MEDIATOR COMPLEX SUBUNIT 6
    Chains: F
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 3 - MEDIATOR COMPLEX SUBUNIT 8
    Chains: H
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 4 - MEDIATOR COMPLEX SUBUNIT 17
    Chains: Q
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 5 - MEDIATOR COMPLEX SUBUNIT 18
    Chains: R
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 6 - MEDIATOR COMPLEX SUBUNIT 20
    Chains: T
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 7 - MEDIATOR COMPLEX SUBUNIT 11
    Chains: K
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 8 - MEDIATOR COMPLEX SUBUNIT 22
    Chains: V
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 9 - MEDIATOR COMPLEX SUBUNIT 4
    Chains: D
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 10 - MEDIATOR COMPLEX SUBUNIT 7
    Chains: G
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 11 - MEDIATOR COMPLEX SUBUNIT 21
    Chains: U
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 12 - MEDIATOR COMPLEX SUBUNIT 31
    Chains: 3
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 13 - MEDIATOR COMPLEX SUBUNIT 9
    Chains: I
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 14 - MEDIATOR COMPLEX SUBUNIT 27
    Chains: 2
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 15 - MEDIATOR COMPLEX SUBUNIT 19
    Chains: S
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
 
Molecule 16 - MEDIATOR COMPLEX SUBUNIT 10
    Chains: J
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : DFGHIJKNQRSTUV23

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 372)

Asymmetric/Biological Unit (1, 372)
No.NameCountTypeFull Name
1UNK372Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 5U0P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5U0P)

(-) Cis Peptide Bonds  (42, 42)

Asymmetric/Biological Unit
No.Residues
1His N:99 -Val N:100
2Leu N:122 -Asp N:123
3Asp N:123 -Ile N:124
4Ser N:150 -Thr N:151
5Tyr N:172 -Glu N:173
6Ile N:174 -Ile N:175
7Ile N:175 -Pro N:176
8Thr N:177 -Pro N:178
9Pro N:257 -Ile N:258
10Ser N:289 -Trp N:290
11Tyr N:353 -Asp N:354
12Asp N:354 -His N:355
13Asp N:375 -His N:376
14His N:418 -Val N:419
15Gly N:506 -Lys N:507
16Ser N:524 -Asn N:525
17Asn N:533 -Ala N:534
18Gly N:549 -Thr N:550
19Ala N:851 -Pro N:852
20Ile N:857 -Lys N:858
21Lys N:861 -Thr N:862
22Ile N:868 -Leu N:869
23Pro F:85 -Pro F:86
24Asp F:163 -Asn F:164
25Asp F:188 -Tyr F:189
26Pro F:193 -Glu F:194
27Ile Q:41 -Ile Q:42
28Thr Q:76 -Glu Q:77
29Val Q:96 -Glu Q:97
30Pro Q:161 -Pro Q:162
31Asp Q:418 -Ala Q:419
32Gly R:28 -Pro R:29
33Val R:44 -Pro R:45
34Pro R:46 -Asn R:47
35Pro R:154 -Pro R:155
36Pro T:78 -Glu T:79
37Lys T:149 -Cys T:150
38Phe G:13 -Pro G:14
39Thr G:70 -Ser G:71
40Arg 3:89 -Ala 3:90
41Ser I:96 -Glu I:97
42Glu 2:108 -Thr 2:109

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U0P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U0P)

(-) Exons   (0, 0)

(no "Exon" information available for 5U0P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 2 from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhh............ee......ee.....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 5u0p 2   1 MSLEEQRTRDELKHKLLDLNQLTICPSLLKLLHPETGTVNSFYTHLKSSNDTENNETKSINGKSAKEPHHSEHDNDNF 136
                                    10        20 ||     38       |62       102       112    || 125 ||     
                                                22|             46|       70|             117|   127|     
                                                 31              61       101              121    131     


Chain 3 from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......hhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhh........hhhhhhhhhhhhh..........hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5u0p 3   2 ETKWLLSKVPDDKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEW 104
                                    11        21        31        41        51        61        71        81        91       101   


Chain D from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5u0p D   6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 106
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Chain F from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhh....eeee..........eeeeeee.....eeeeeeeee....eee..hhhhhhhhhhhhhhhhhhhhhhh.....eee...eee..............................hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p F  10 DLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTKIEKFPQYNPQEGYTYPKLSNDNLEENKNQSIENADYSFSPEDFSVVRAFMQSLHSSKEAPDV 215
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159      |180       190       200       210     
                                                                                                                                                                                      166|                                     
                                                                                                                                                                                       178                                     


Chain G from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhh...hhhhhh..........hhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p G  11 SAFPPPPPYYKLFTRENIEKVISNMEKEAKSLAKLFKKPSCLTSGTYQMFGDTWRLDEANAIVGTSFTRVHDLIKIPRRAYELRFLSRSLMLNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLINDYRPHQSRESLIMLLEKQLKHEESQVELLRTHNRQMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKP 341
                                    20        30        40|       67        77       119       129||     227       237       247       257       267       277       287       297       307       317       327       337    
                                                        40|                          86|        130|                                                                                                                          
                                                         58                          119         219                                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p H   3 DISTEKTVESLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQEPLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFMEERENYSWFRQLEIDRATEEQNANQMLTDILSFMKSGKR 200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152 ||    178       188       198  
                                                                                                                                                                                 154|                             
                                                                                                                                                                                  171                             


Chain I from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 5u0p I  47 TLLRQGIRQLKEKVSKMEPEEMTVKEKKSIIEILKARIALKKAFLKMALSESNDTVVKKEDVRESPVDTFMENAT 121
                                    56        66        76        86        96       106       116     


Chain J from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5u0p J   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 342
                            ||||||||10||||||||20||||||||32||||||||42||||||||52|||||||165|||||||175|||||||185|||||||195|||||||310|||||||320|||||||330|||||||340||
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Chain K from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 5u0p K  15 SSDTQQVQNILELEAKIPDILSSAGKCIEAIQLNNSLEDFRKYSKEFLETVEFISTGLRRQALELEKAEVPVVSLQPKKRYASTPLSNLIFDQSSKLI 112
                                    24        34        44        54        64        74        84        94       104        


Chain N from PDB  Type:PROTEIN  Length:520
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...........hhhhhhhhhhhhhhh......hhhhhhh...................hhhhhhhhhhhhhhhhhhhhh..............eeee.....eeee...................eee...........hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................ee.......ee.ee.....hhhhhh................ee.................hhhhhhhhhhhhhhhhhhhhhhhhh............ee....eeeee........eeee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh............................eee....eeee.......eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p N  86 FLQGQKFCFQNLVHVLQDIRYQLSFARLRNSDLVTALDILSTGTSLRLANAPTSKLYMLSESPLSTKQILQTLHALNMLIRIRLSLYEIIPTPFQHFTIANGRCTFTVPNEFSVSLTTNSQDPKSTGISFQWIVVDFQFHLPDFSSTPAKYRVFIELHLNEEIAAAFVLQKPILPLIYNILHKFCLYQRLNLLSQQTFQLSRESWLGHLRGVYDEKPPRLRLYYWPQLGHYIHIFVNTQPISAFERTLSSKRSSCEYDHFLLLVEWHHDGIVEHVPLDDHMDAQHLLLLITQKHAQLILEQIRKELHPNIFSEHVGGGLKIHVFDNEIIVKVNSVTGRLVLSLSPPRHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVAQCAELHAVQGYYSFPYLTFSKGKWWVLAYNVESNSWSVRLLNAAGQTLYTQDVHTTKGTLSIESFSRLSYLLEVQILLFNVQTACAAPEMHLIKMNKTADLTAILKRILAISRKKxxxxxxxxxxxxxxxxxxxxxx 901
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       326       336       346       356       366       376       386       396       406       416       426       436 ||    451       461       471       481       491       501      |518       528       538       548       558       568       851       861       871       881|||||||891|||||||901
                                                                                                                                                                                                                                                             313|                                                                                                              438|                                                             508|                                                         576|                           880-UNK||889-UNK||898-UNK
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Chain Q from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee......eee............eeee........ee..........eeeeee.....eeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....ee........eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh......ee..hhhhh..hhhhhhhhh.......ee...........eee.........eee....eee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p Q   8 DADISSLSLSLDPEIIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQKESIKDESSAKSSETENVLEFATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKEKSLTSSCKFLFEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQGSNHLSVQYSCLGGISLGLGLIRMKPESKSFEVQSSLLYSQAALKISILNKDRDEIGSSTWSWPSQNCNSVLLKDIYKLQEILFEMDIWNSLLQEAQSCGNQGVNFTGDEILVPISDDHVVRITLETSKQEKELLKCLCDTLNAIAHILFLKHCRKSDRRSQQPELYMAIDANAPLILRPLIFYYNLNQESLEFQRWLKQRDISFKFMPNYPWEKAKDFLELENSLSINRLSISWRIMVSNFEPAIFIQHTPTLHGVWRCKDQYSSNQFSSLKNVCQYIEHHINSLSRRSKKT 544
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347  ||   382       392       402       412       422       432       442       452       462       472       482       492       502||     516       526       536        
                                                                                                                                                                                                                                                                                                                                                                                350|                                                                                                                            503|                                    
                                                                                                                                                                                                                                                                                                                                                                                 376                                                                                                                             508                                    


Chain R from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eee...hhhhhhhhhhh.....eeeeee.eeee...............eeee...........hhhhhh.eeee...............ee...eee.....hhhhhhh..ee....eeeeeeeee..eeeeee.ee....................eeeeee.ee....hhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p R   1 MQELYLLGVVPSRRFEAVVNSLSKTLDGPKTILEFWVVYRPKDVPPNLPRQPDSWLRLCSNIESHDETDTEWSKNTQWSMYLEGNSEPKREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVRL 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       


Chain S from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p S  71 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 401
                            ||||||||80|||||||258|||||||273|||||||283|||||||306|||||||316|||||||334|||||||344|||||||355|||||||365|||||||389|||||||399||
                           71-UNK|||80-UNK||257-UNK||271-UNK||280-UNK||302-UNK||311-UNK||320-UNK||337-UNK||346-UNK||356-UNK||365-UNK||388-UNK||397-UNK
                            72-UNK|||81-UNK||258-UNK||272-UNK||281-UNK||303-UNK||312-UNK||321-UNK||338-UNK||347-UNK||357-UNK||366-UNK||389-UNK||398-UNK
                             73-UNK|| 82-UNK||259-UNK||273-UNK||282-UNK||304-UNK||313-UNK||322-UNK||339-UNK||348-UNK||358-UNK||381-UNK||390-UNK||399-UNK
                              74-UNK| 251-UNK| 260-UNK| 274-UNK| 283-UNK| 305-UNK| 314-UNK| 331-UNK| 340-UNK| 349-UNK| 359-UNK| 382-UNK| 391-UNK| 400-UNK
                               75-UNK  252-UNK  261-UNK  275-UNK  284-UNK  306-UNK  315-UNK  332-UNK  341-UNK  351-UNK  360-UNK  383-UNK  392-UNK  401-UNK
                                76-UNK  253-UNK  262-UNK  276-UNK  285-UNK  307-UNK  316-UNK  333-UNK  342-UNK  352-UNK  361-UNK  384-UNK  393-UNK    
                                 77-UNK  254-UNK  263-UNK  277-UNK  286-UNK  308-UNK  317-UNK  334-UNK  343-UNK  353-UNK  362-UNK  385-UNK  394-UNK   
                                  78-UNK  255-UNK  264-UNK  278-UNK  287-UNK  309-UNK  318-UNK  335-UNK  344-UNK  354-UNK  363-UNK  386-UNK  395-UNK  
                                   79-UNK  256-UNK  265-UNK  279-UNK  301-UNK  310-UNK  319-UNK  336-UNK  345-UNK  355-UNK  364-UNK  387-UNK  396-UNK 


Chain T from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....hhhhhhhhh........eee.......................ee....................hhhhhhhhh..........ee........eeee.............eeeeee....hhhhhhhhhhhh..................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p T   2 PVHGVIYYSSPSMATFLSPAQDNLVRTYFAQHLKKWVVQYKLYRNAVTPKTLEFLKQNINPSMLACVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWKGILFHVTYDGTESVDLARPIIQEFFLKCFLQNNKSVTPVYLDSKLLLQLFKQRIDTVS 190
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161||     181         
                                                                                                                                                                                          162|                 
                                                                                                                                                                                           173                 


Chain U from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p U   1 MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVSAEELQFAQRDLAKDLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAKRIETFGRLSCVLFQP 138
                                    10        20        30  ||    56        66        76        86        96       106       116       126       136  
                                                           33|                                                                                        
                                                            50                                                                                        


Chain V from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 5u0p V   5 SFQRQLVQRTNTLNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLEVSLIEP 122
                                    14        24        34        44        54        64        74        84        94       104       114
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U0P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U0P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U0P)

(-) Gene Ontology  (20, 107)

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  Cis Peptide Bonds
    Ala N:851 - Pro N:852   [ RasMol ]  
    Arg 3:89 - Ala 3:90   [ RasMol ]  
    Asn N:533 - Ala N:534   [ RasMol ]  
    Asp F:163 - Asn F:164   [ RasMol ]  
    Asp F:188 - Tyr F:189   [ RasMol ]  
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    Asp N:354 - His N:355   [ RasMol ]  
    Asp N:375 - His N:376   [ RasMol ]  
    Asp Q:418 - Ala Q:419   [ RasMol ]  
    Glu 2:108 - Thr 2:109   [ RasMol ]  
    Gly N:506 - Lys N:507   [ RasMol ]  
    Gly N:549 - Thr N:550   [ RasMol ]  
    Gly R:28 - Pro R:29   [ RasMol ]  
    His N:418 - Val N:419   [ RasMol ]  
    His N:99 - Val N:100   [ RasMol ]  
    Ile N:174 - Ile N:175   [ RasMol ]  
    Ile N:175 - Pro N:176   [ RasMol ]  
    Ile N:857 - Lys N:858   [ RasMol ]  
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    Lys N:861 - Thr N:862   [ RasMol ]  
    Lys T:149 - Cys T:150   [ RasMol ]  
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    Pro F:193 - Glu F:194   [ RasMol ]  
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    Pro R:46 - Asn R:47   [ RasMol ]  
    Pro T:78 - Glu T:79   [ RasMol ]  
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    Thr N:177 - Pro N:178   [ RasMol ]  
    Thr Q:76 - Glu Q:77   [ RasMol ]  
    Tyr N:172 - Glu N:173   [ RasMol ]  
    Tyr N:353 - Asp N:354   [ RasMol ]  
    Val Q:96 - Glu Q:97   [ RasMol ]  
    Val R:44 - Pro R:45   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MED11_SCHPO | Q9P6Q0: 4h63 5n9j 5u0s
        MED14_SCHPO | Q9P7Y4: 5n9j 5u0s
        MED17_SCHPO | P87306: 4h63 5n9j 5u0s
        MED18_SCHPO | O14198: 3c0t 4h63 5n9j 5u0s
        MED20_SCHPO | Q10317: 5n9j 5u0s
        MED21_SCHPO | O94376: 5n9j 5u0s
        MED22_SCHPO | O14010: 4h63 5n9j 5u0s
        MED27_SCHPO | Q10477: 5u0s
        MED31_SCHPO | Q9USH1: 5n9j 5u0s
        MED6_SCHPO | Q9US45: 4h61 4h63 5n9j 5u0s
        MED7_SCHPO | O60104: 5n9j 5u0s
        MED8_SCHPO | O94646: 3c0t 4h63 5n9j 5u0s
        YE44_SCHPO | O13964: 5n9j 5u0s

(-) Related Entries Specified in the PDB File

5u0s