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(-) Description

Title :  STRUCTURE OF THE SCHIZOSACCHAROMYCES POMBE MEDIATOR SUBUNIT MED6
 
Authors :  L. Lariviere, C. Plaschka, M. Seizl, L. Wenzeck, F. Kurth, P. Cramer
Date :  19 Sep 12  (Deposition) - 31 Oct 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Transcription, Mediator Complex, Nucleus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lariviere, C. Plaschka, M. Seizl, L. Wenzeck, F. Kurth, P. Cramer
Structure Of The Mediator Head Module.
Nature V. 492 448 2012
PubMed-ID: 23123849  |  Reference-DOI: 10.1038/NATURE11670

(-) Compounds

Molecule 1 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28B
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP REISDUES 10-180
    Gene: MED6, PMC5, SPAC1002.15C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972H
    Synonym: MEDIATOR COMPLEX SUBUNIT 6, RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN PMC5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H61)

(-) Sites  (0, 0)

(no "Site" information available for 4H61)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H61)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:85 -Pro A:86
2Pro B:85 -Pro B:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H61)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H61)

(-) Exons   (0, 0)

(no "Exon" information available for 4H61)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhh......hhhhhhhh.......hhhhhhhhhhhhh.....hhhhhhhh..eeeeeeeeee...eeeeeeeee.....eeeeeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h61 A   8 HMDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTKIE 144
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhh...hhhhhhhhhh........hhhhhhhh...hhhhhhhhhh..eeeeeeeeee...eeeeeeeee.....eeeeeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h61 B   8 HMDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTKIEKFP 147
                                    17        27        37        47        62        72        82        92       102       112       122       132       142     
                                                                           56|                                                                                     
                                                                            62
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H61)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H61)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H61)

(-) Gene Ontology  (9, 9)

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  Cis Peptide Bonds
    Pro A:85 - Pro A:86   [ RasMol ]  
    Pro B:85 - Pro B:86   [ RasMol ]  
 
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  4h61
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  MED6_SCHPO | Q9US45
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MED6_SCHPO | Q9US45: 4h63 5n9j 5u0p 5u0s

(-) Related Entries Specified in the PDB File

4h62 4h63