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(-) Description

Title :  CRYSTAL STRUCTURE OF CURK DEHYDRATASE D1169N INACTIVE MUTANT
 
Authors :  G. J. Dodge, J. L. Smith
Date :  21 Nov 16  (Deposition) - 11 Jan 17  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dehydratase, Curacin, Polyketide Synthase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. D. Fiers, G. J. Dodge, D. H. Sherman, J. L. Smith, C. C. Aldrich
Vinylogous Dehydration By A Polyketide Dehydratase Domain I Curacin Biosynthesis.
J. Am. Chem. Soc. V. 138 16024 2016
PubMed-ID: 27960309  |  Reference-DOI: 10.1021/JACS.6B09748

(-) Compounds

Molecule 1 - CURK
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)PRARE AI
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 958-1250
    Gene: LYNGBM3L_74450
    Mutation: YES
    Organism Scientific: MOOREA PRODUCENS 3L
    Organism Taxid: 489825
    Synonym: POLYKETIDE SYNTHASE MODULE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:1019 , LEU A:1021 , TYR A:1060binding site for residue FLC A 1301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TZ7)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:989 -Pro A:990
2Ser B:989 -Pro B:990
3Glu B:1056 -Asn B:1057

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TZ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TZ7)

(-) Exons   (0, 0)

(no "Exon" information available for 5TZ7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee........eeeeeeeee...hhhhh.eee..eee.hhhhhhhhhhhhhhhh.....eeeeeeeee....ee....eeeeeeeeeeee..eeeeeeeee......eeeeeeeeeee.......hhhhhhhhh.ee.hhhhhhhhhhhh.eee.hhhh.eeeeeee..eeeeeee....hhhhhhhh..hhhhhhhhhhhhhhhhh.......eeeeeeeeeeee......eeeeeee.......eeeeee.....eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tz7 A  962 LHPLLGEKLNLARIENQHHFQSYLTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETDIKTVQTVISTLENNSYKLEIFSTSEANQWTLHAEGKIFLDSTTNAKIDLEQYQRECSQVIDIQQHYQQFKSRGIDYGNSFQGIKQLWKGQGKALGKIALPEEIAGQATDYQLHPALLNAALQILGHAIGNTETDDKAYLPVGIDKLKQYRQTITQVWAIVEIPENTLKGSIKLVDNQGSLLAEIEGLRVTATTA 1245
                                   971       981       991      1001      1011      1021      1031      1041      1051      1061      1076      1086      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238       
                                                                                                                                    1069|              1093|                                                                                                                                                     
                                                                                                                                     1075               1096                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee.......eeeeeeee....hhhhh.eee..eee.hhhhhhhhhhhhhhhhh....eeeeeeeee....ee.....eeeeeeeeee...eeeeeeeee......eeeeeeeeeee....hhhhhhhhh.ee.hhhhhhhhhhhh.eee.hhhh.eeeeeee..eeeeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhhh.......eeeeeeeeeeee......eeeeeee......eeeeeee.....eeeeeeeeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tz7 B  962 LHPLLGEKLNLARIENQHHFQSYLTAESPAYLSQHQVFNKVLFPATGYLEIAAAVGKNLLTTGEQVVVSDVTIVRGLVIPETDIKTVQTVISTLENNSYKLEIFSTSEGNQWTLHAEGKIFLDKAKIDLEQYQRECSQVIDIQQHYQQFKSRGIDYGNSFQGIKQLWKGQGKALGKIALPEEIAGQATDYQLHPALLNAALQILGHAIGNTETDDKAYLPVGIDKLKQYRQTITQVWAIVEIPENTLKGSIKLVDNQGSLLAEIEGLRVTATTADALLK 1250
                                   971       981       991      1001      1011      1021      1031      1041      1051      1061      1076      1086  ||  1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241         
                                                                                                                                     1070|         1089|                                                                                                                                                           
                                                                                                                                      1076          1095
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TZ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TZ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TZ7)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        F4Y425_9CYAN | F4Y425: 4myz 5dp1 5tz5

(-) Related Entries Specified in the PDB File

5tz5 5tz6