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(-) Description

Title :  MOLECULAR DYNAMICS FLEXIBLE FITTING MODEL OF COXSACKIEVIRUS A16 EMPTY PROCAPSID VP1 SUBUNIT
 
Authors :  C. Fan, Y. Cong, X. Ye, Z. Huang
Date :  29 Oct 16  (Deposition) - 01 Feb 17  (Release) - 01 Feb 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (60x)
Keywords :  Coxsackievirus, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Chen, X. Ye, Z. I. Ku, L. L. Kong, Q. Liu, C. Xu, Y. Cong, Z. Huang
Structural Alteration And Surface Modifi Cation Of Coxsackievirus A16 Capsids By Beta-Propiolactone Treatment
J. Virol. 2017
PubMed: search

(-) Compounds

Molecule 1 - COXSACKIEVIRUS A16 EMPTY PROCAPSID VP1 SUBUNIT
    Cell Line: VERO
    Chains: A
    Organism Scientific: COXSACKIEVIRUS A16
    Organism Taxid: 31704
    Strain: SZ05

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (60x): A

Summary Information (see also Sequences/Alignments below)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:217 -Asn A:218

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeeeee..........eeeee.....hhhhhhhhh.eeeeeeeeeeeeeee.........eeeeeee...........hhhhhh....eeeee.....eeeee........ee.................hhhhh..eeeeee.........eeeeeeeeeeeeeeeee.................................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tsk A  74 STQETAIGNFFSRAGLVSIITMPTTGTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGELVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTQANDLDYGQCPNNMMGTFSIRTVGIEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL 297
                                    83        93       103       113       123       133       143       153       163       173       183       193       203      |218       228       238       248       258       268       278       288         
                                                                                                                                                                  210|                                                                                 
                                                                                                                                                                   216
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(-) Gene Ontology  (36, 36)

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    Ala A:217 - Asn A:218   [ RasMol ]  
 
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5tsl