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(-) Description

Title :  CRYSTAL STRUCTURE OF A LIPOMYCES STARKEYI LEVOGLUCOSAN KINASE G359R MUTANT
 
Authors :  J. P. Bacik, J. R. Klesmith, R. Michalczyk, T. A. Whitehead
Date :  07 Oct 16  (Deposition) - 08 Feb 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Sugar Kinase, Atp-Binding, Carbohydrate Metabolism, Levoglucosan, Transferase, Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Klesmith, J. P. Bacik, E. E. Wrenbeck, R. Michalczyk, T. A. Whitehead
Trade-Offs Between Enzyme Fitness And Solubility Illuminate By Deep Mutational Scanning.
Proc. Natl. Acad. Sci. V. 114 2265 2017 U. S. A.
PubMed-ID: 28196882  |  Reference-DOI: 10.1073/PNAS.1614437114

(-) Compounds

Molecule 1 - LEVOGLUCOSAN KINASE
    Chains: A
    EC Number: 2.7.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Common: OLEAGINOUS YEAST
    Organism Scientific: LIPOMYCES STARKEYI
    Organism Taxid: 29829

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2K2Ligand/IonPOTASSIUM ION
3MG2Ligand/IonMAGNESIUM ION
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2K-1Ligand/IonPOTASSIUM ION
3MG-1Ligand/IonMAGNESIUM ION
4SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:22 , THR A:23 , SER A:24 , ASP A:26 , GLY A:188 , GLY A:189 , ASN A:217 , ASP A:221 , TYR A:234 , ASP A:235 , ASP A:237 , GLY A:327 , GLY A:328 , GLY A:329 , TYR A:331 , ARG A:359 , GLU A:362 , MG A:502 , MG A:503 , SO4 A:504 , K A:506 , HOH A:622 , HOH A:646 , HOH A:658 , HOH A:696 , HOH A:700 , HOH A:720 , HOH A:725 , HOH A:735 , HOH A:779 , HOH A:898binding site for residue ADP A 501
2AC2SOFTWAREASP A:26 , ADP A:501 , HOH A:646 , HOH A:658 , HOH A:735binding site for residue MG A 502
3AC3SOFTWAREGLU A:362 , ADP A:501 , SO4 A:504 , HOH A:622 , HOH A:725binding site for residue MG A 503
4AC4SOFTWAREGLY A:22 , THR A:23 , ASN A:186 , GLY A:188 , GLY A:189 , ILE A:190 , GLU A:362 , ADP A:501 , MG A:503 , HOH A:622 , HOH A:623 , HOH A:626 , HOH A:725 , HOH A:801binding site for residue SO4 A 504
5AC5SOFTWARELEU A:174 , HIS A:176 , ASN A:436 , ASN A:437 , HOH A:831 , HOH A:948binding site for residue K A 505
6AC6SOFTWAREASP A:29 , TYR A:51 , GLU A:53 , ARG A:359 , ADP A:501 , HOH A:696 , HOH A:700binding site for residue K A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TKR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:164 -Pro A:165
2Pro A:264 -Pro A:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TKR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TKR)

(-) Exons   (0, 0)

(no "Exon" information available for 5TKR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeee.....eeeeeeeeeee......eeeeeeeeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeeeeeeeee.........eeeee.hhhhhhhhhh..eeehhhhhhhhh.......hhhhhhhhhh.....eeeeee..eeeeeee............eeeeeee.hhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhh.hhhhhh...........hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhh...eeee.hhhh....hhhhhhhhhhhhhhhhh..................eee...hhhhhhhhhhh.............eeeee..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tkr A  10 NVLDFTVLGLNSGTSMDGIDCALCHFYQKTPDAPMEFELLEYGEVPLAQPIKQRVMRMILEDTTSPSELSEVNVILGEHFADAVRQFAAERNVDLSTIDAIASHGQTIWLLSMPEEGQVKSALTMAEGAILASRTGITSITDFRISDQAAGRQGAPLIAFFDALLLHHPTKLRACQNIGGIANVCFIPPDVDGRRTDEYYDFDTGPGNVFIDAVVRHFTNGEQEYDKDGAMGKRGKVDQELVDDFLKMPYFQLDPPKTTGREVFRDTLAHDLIRRAEAKGLSPDDIVATTTRITAQAIVDHYRRYAPSQEIDEIFMCGGGAYNPNIVEFIQQSYPNTKIMMLDEAGVPARAKEAITFAWQGMEALVGRSIPVPTRVETRQHYVLGKVSPGLNYRSVMKKGMAFGGDAQQLPWVSEMIVKKKGKVITNNWALE 441
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TKR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TKR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TKR)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  5tkr
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  2.7.-.-
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 Related Entries

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UniProtKB/TrEMBL
        B3VI55_LIPST | B3VI55: 4yh5 4zfv 4zlu 5bsb 5bvc

(-) Related Entries Specified in the PDB File

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