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(-) Description

Title :  LIPOMYCES STARKEYI LEVOGLUCOSAN KINASE BOUND TO LEVOGLUCOSAN
 
Authors :  J. P. Bacik
Date :  01 Jun 15  (Deposition) - 16 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Sugar Kinase, Atp-Binding, Carbohydrate Metabolism, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Bacik, J. R. Klesmith, T. A. Whitehead, L. R. Jarboe, C. J. Unkefer B. L. Mark, R. Michalczyk
Producing Glucose 6-Phosphate From Cellulosic Biomass: Structural Insights Into Levoglucosan Bioconversion.
J. Biol. Chem. V. 290 26638 2015
PubMed-ID: 26354439  |  Reference-DOI: 10.1074/JBC.M115.674614

(-) Compounds

Molecule 1 - LEVOGLUCOSAN KINASE
    Chains: A
    EC Number: 2.7.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: OLEAGINOUS YEAST
    Organism Scientific: LIPOMYCES STARKEYI
    Organism Taxid: 29829

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
14PW1Ligand/IonLEVOGLUCOSAN
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
14PW2Ligand/IonLEVOGLUCOSAN
2SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:153 , ALA A:164 , PRO A:165 , ASN A:192 , ASP A:212 , HOH A:608 , HOH A:687 , HOH A:738 , HOH A:739 , HOH A:782binding site for residue 4PW A 501
2AC2SOFTWAREGLY A:22 , THR A:23 , SER A:24 , GLY A:188 , GLY A:189 , HOH A:608 , HOH A:686binding site for residue SO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BSB)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:164 -Pro A:165
2Pro A:264 -Pro A:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BSB)

(-) Exons   (0, 0)

(no "Exon" information available for 5BSB)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.....eeeeeeeeeee......eeeeeeeeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeeeeeeeee.........eeeee.hhhhhhhhhh..eeehhhhhhhhh.......hhhhhhhhhh.....eeeeee..eeeeeee............eeeeeee.hhhhhhhhhhh.......hhhhhhhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhh...eeee.hhhh.hhhhhhhhhhhhhhhhhhhh..................eee...hhhhhhhhhhhh............eeeee..eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bsb A  10 NVLDFTVLGLNSGTSMDGIDCALCHFYQKTPDAPMEFELLEYGEVPLAQPIKQRVMRMILEDTTSPSELSEVNVILGEHFADAVRQFAAERNVDLSTIDAIASHGQTIWLLSMPEEGQVKSALTMAEGAILASRTGITSITDFRISDQAAGRQGAPLIAFFDALLLHHPTKLRACQNIGGIANVCFIPPDVDGRRTDEYYDFDTGPGNVFIDAVVRHFTNGEQEYDKDGAMGKRGKVDQELVDDFLKMPYFQLDPPKTTGREVFRDTLAHDLIRRAEAKGLSPDDIVATTTRITAQAIVDHYRRYAPSQEIDEIFMCGGGAYNPNIVEFIQQSYPNTKIMMLDEAGVPAGAKEAITFAWQGMEALVGRSIPVPTRVETRQHYVLGKVSPGLNYRSVMKKGMAFGGDAQQLPWVSEMIVKKKGKVITNNWAGSH 442
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BSB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BSB)

(-) Gene Ontology  (7, 7)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3VI55_LIPST | B3VI55: 4yh5 4zfv 4zlu 5bvc 5tkr

(-) Related Entries Specified in the PDB File

4yh5 4zfv 4zlu