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(-) Description

Title :  INFLUENZA A VIRUS NUCLEOPROTEIN IN COMPLEX WITH INHIBITORY NANOBODY
 
Authors :  L. Hanke, K. E. Knockenhauer, H. L. Ploegh, T. U. Schwartz
Date :  05 Oct 16  (Deposition) - 21 Dec 16  (Release) - 04 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.23
Chains :  Asym. Unit :  A,K
Biol. Unit 1:  A,K  (3x)
Keywords :  Influenza, Nucleoprotein, Vhh, Inhibitory, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Hanke, K. E. Knockenhauer, R. C. Brewer, E. Van Diest, F. I. Schmidt T. U. Schwartz, H. L. Ploegh
The Antiviral Mechanism Of An Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment.
Mbio V. 7 2016
PubMed-ID: 27965447  |  Reference-DOI: 10.1128/MBIO.01569-16

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B+
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: NP
    Organism Scientific: INFLUENZA A VIRUS (A/WSN/1933(H1N1))
    Organism Taxid: 382835
    Strain: A/WSN/1933(H1N1)
 
Molecule 2 - NP-SPECIFIC INHIBITORY VHH
    Chains: K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHEN-6
    Expression System Strain: WK6
    Expression System Taxid: 562
    Organism Scientific: VICUGNA PACOS
    Organism Taxid: 30538

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AK
Biological Unit 1 (3x): AK

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TJW)

(-) Sites  (0, 0)

(no "Site" information available for 5TJW)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1K:23 -K:97

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TJW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TJW)

(-) Exons   (0, 0)

(no "Exon" information available for 5TJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhh.........hhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhh.............hhhhhhhhhhh..hhhhhh.....hhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh................eeee......ee..................................hhhhhhhh........hhhhhhhhhhhhhhh............ee...................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tjw A  21 NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPFDRPTIMAAFTGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDEGSYFFG 490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480|      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     480|      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      484      


Chain K from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee.....eeeeeeehhhhhh..eeeeeee......eeeeeee.....eee.......eeeee.....eeeeee...hhhhheeeeeeee......hhhhh.ee....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tjw K   2 QVQLQESGGGLVQAGGSLRLTCALSERTSTSYAQGWFRQPPGKEREFVASLRTHDGNTHYTDSVKGRFTISRDNAENTLYLQMNSLKTEDTAVYYCAASLGYSGAYASGYDYWGQGTQVTVS 123
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TJW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TJW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TJW)

(-) Gene Ontology  (10, 20)

Asymmetric Unit(hide GO term definitions)

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  5tjw
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  Q1K9H2_I33A0 | Q1K9H2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q1K9H2_I33A0 | Q1K9H2: 3zdp 4iry 5b7b
UniProtKB/TrEMBL
        Q1K9H2_I33A0 | Q1K9H2: 2iqh 2ymn 3ro5 3tg6 4bbl 4dya 4dyb 4dyn 4dyp 4dyt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5TJW)