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(-)Asym./Biol. Unit
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(-) Description

Title :  INFLUENZA A VIRUS TAIL-LOOP FREE NUCLEOPROTEIN AT 2.8 A RESOLUTION
 
Authors :  Q. Ye, D. A. Mata, Y. J. Tao
Date :  15 Jan 13  (Deposition) - 13 Feb 13  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nucleoprotein, Oligomerization, Rna Binding, Rnp Assembly, Rna, Nucleus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Ye, T. S. Guu, D. A. Mata, R. L. Kuo, B. Smith, R. M. Krug, Y. J. Tao
Biochemical And Structural Evidence In Support Of A Coheren Model For The Formation Of The Double-Helical Influenza A Virus Ribonucleoprotein.
Mbio V. 4 67-12 2012
PubMed-ID: 23269829  |  Reference-DOI: 10.1128/MBIO.00467-12

(-) Compounds

Molecule 1 - NUCLEOCAPSID PROTEIN
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: ROSETTA2(DE3) SINGLES
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP, NUCLEOPROTEIN
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 381518
    Strain: A/WILSON-SMITH/1933(H1N1)

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4IRY)

(-) Sites  (0, 0)

(no "Site" information available for 4IRY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IRY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:100 -Asp A:101

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4IRY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4irya_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeee....eeeeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.............hhhhhhhhhhh..hhhhhh....hhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh....hhhhhhhhhh....................hhhhh.eeee.....eee......hhhhhhhhhhhh...eee................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iry A  21 NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRNKYLEKKTGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGIRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSSDMRTEIIRLMESGRGVFELSDEKATSPIVPSFDMSNEGSYFFGDNAEEYDN 498
                                    30        40        50        60        70        80|       99       109       119       129       139       149       159       169       179       189       199 ||    220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 ||    445    || 464       474       484       494    
                                                                                      80|                                                                                                            201|                                                                                                                                                                                392|         450|                                      
                                                                                       90                                                                                                             213                                                                                                                                                                                 438          460                                      


Chain B from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4iryb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.................eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhh.....hhhhhhhhh...eeee....hhhhhhhhhhhhhh.....hhhhhhhhhh....hhhhh................eeee.......eee..hhhhhhhhhhhh.....eee.................................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iry B  21 NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRSDMRTEIIRLMESARPGRGVFELSDEKATSPIVPSFDMSNEGSYFFGDNAEEYDN 498
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       438       448    || 464       474       484       494    
                                                                                                                                                                                                                                                                                                                                                                                                          389|            453|                                      
                                                                                                                                                                                                                                                                                                                                                                                                           438             460
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IRY)

(-) Gene Ontology  (11, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4iry)
 
  Cis Peptide Bonds
    Val A:100 - Asp A:101   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAP_I33A0 | P15682: 3zdp 4bbl 5b7b
        Q1K9H2_I33A0 | Q1K9H2: 3zdp 5b7b
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(-) Related Entries Specified in the PDB File

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