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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  ATOMIC MODEL FOR THE MEMBRANE-EMBEDDED MOTOR OF A EUKARYOTIC V-ATPASE
 
Authors :  M. T. Mazhab-Jafari, A. Rohou, C. Schmidt, S. A. Bueler, S. Benlekbir, C. V. Robinson, J. L. Rubinstein
Date :  03 Oct 16  (Deposition) - 26 Oct 16  (Release) - 16 Nov 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.90
Chains :  Asym./Biol. Unit :  A,B,D,E,F,G,H,I,J,L,M,N,O,P
Keywords :  Rotary Atpase, Vacuolar-Type Atpase, Electron Cryomicroscopy, Vo Region, Membrane Protein, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Mazhab-Jafari, A. Rohou, C. Schmidt, S. A. Bueler, S. Benlekbir, C. V. Robinson, J. L. Rubinstein
Atomic Model For The Membrane-Embedded Vo Motor Of A Eukaryotic V-Atpase.
Nature V. 539 118 2016
PubMed-ID: 27776355  |  Reference-DOI: 10.1038/NATURE19828

(-) Compounds

Molecule 1 - V-TYPE PROTON ATPASE SUBUNIT A
    Chains: A
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE A 1 SUBUNIT,V-ATPASE 95 KDA SUBUNIT,VACUOLAR PH PROTEIN 1,VACUOLAR PROTON PUMP A SUBUNIT,VACUOLAR PROTON TRANSLOCATING ATPASE SUBUNIT A 1,V-ATPASE A 1 SUBUNIT,V-ATPASE 95 KDA SUBUNIT,VACUOLAR PH PROTEIN 1,VACUOLAR PROTON PUMP A SUBUNIT,VACUOLAR PROTON TRANSLOCATING ATPASE SUBUNIT A 1,V-ATPASE A 1 SUBUNIT,V-ATPASE 95 KDA SUBUNIT,VACUOLAR PH PROTEIN 1,VACUOLAR PROTON PUMP A SUBUNIT, VACUOLAR PROTON TRANSLOCATING ATPASE SUBUNIT A 1,V-ATPASE A 1 SUBUNIT,V-ATPASE 95 KDA SUBUNIT,VACUOLAR PH PROTEIN 1,VACUOLAR PROTON PUMP A SUBUNIT,VACUOLAR PROTON TRANSLOCATING ATPASE SUBUNIT A 1
 
Molecule 2 - V-TYPE PROTON ATPASE SUBUNIT C''
    Chains: B
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE SUBUNIT C'',V-ATPASE 22 KDA PROTEOLIPID SUBUNIT, VACUOLAR PROTON PUMP C'' SUBUNIT
 
Molecule 3 - V-TYPE PROTON ATPASE SUBUNIT C'
    Chains: D
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE SUBUNIT C',PROTEOLIPID PROTEIN VMA11, TRIFLUOPERAZINE RESISTANCE PROTEIN 3,V-ATPASE 16 KDA PROTEOLIPID SUBUNIT 2,VACUOLAR PROTON PUMP C' SUBUNIT
 
Molecule 4 - V-TYPE PROTON ATPASE SUBUNIT C
    Chains: E, F, G, H, I, J, M, N
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE SUBUNIT C,GUANINE NUCLEOTIDE EXCHANGE FACTOR 2,V- ATPASE 16 KDA PROTEOLIPID SUBUNIT 1,VACUOLAR PROTON PUMP C SUBUNIT
 
Molecule 5 - V-TYPE PROTON ATPASE SUBUNIT E
    Chains: L
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE SUBUNIT E,LOW DYE-BINDING PROTEIN 10,VACUOLAR PROTON PUMP SUBUNIT E
 
Molecule 6 - V-TYPE PROTON ATPASE SUBUNIT F
    Chains: O
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 7 - V-TYPE PROTON ATPASE SUBUNIT D
    Chains: P
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V- ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D, V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V- ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D, V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D,V-ATPASE SUBUNIT D,V-ATPASE 39 KDA SUBUNIT,V-ATPASE SUBUNIT M39,VACUOLAR PROTON PUMP SUBUNIT D

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABDEFGHIJLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 365)

Asymmetric/Biological Unit (1, 365)
No.NameCountTypeFull Name
1UNK365Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 5TJ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TJ5)

(-) Cis Peptide Bonds  (25, 25)

Asymmetric/Biological Unit
No.Residues
1Unk A:33 -Unk A:34
2Unk A:34 -Unk A:35
3Unk A:36 -Unk A:37
4Unk A:38 -Unk A:39
5Unk A:110 -Unk A:111
6Unk A:231 -Unk A:232
7Unk A:243 -Unk A:244
8Unk A:271 -Unk A:272
9Unk A:274 -Unk A:275
10Unk A:277 -Unk A:278
11Ile A:405 -Asn A:406
12Asp A:597 -Trp A:598
13Pro A:604 -Ala A:605
14Ala A:605 -Pro A:606
15Asp A:623 -Asp A:624
16Phe B:47 -Gly B:48
17Gly D:47 -Ile D:48
18Leu D:55 -Ile D:56
19Leu D:92 -Phe D:93
20Trp L:22 -Ile L:23
21Val L:60 -Ala L:61
22Tyr P:5 -Phe P:6
23Arg P:124 -Cys P:125
24Unk P:153 -Unk P:154
25Arg P:337 -Ile P:338

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TJ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TJ5)

(-) Exons   (0, 0)

(no "Exon" information available for 5TJ5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:570
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...................................................hhhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhh...........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh............hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 A   3 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAQYREINAGLPTIVTFPFMFAIMFGHGFLMTLAALSLVLNEKKINKMKRGEIFDMAFTGRYIILLMGVFSMYTGFLYNGTENALLFSNSYKMKLSILMGFIHMTYSYFFSLANHLDIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTIDDELYPHQAKVQVFLLLMALVCIPWLLLVKPLHFKFDIMIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVLWTMTIQIAFGFRGFVGVFMTVALFAMWFALTCAVLVLMEGTSAMLHSLRLHWVESMSKPYEPFAFEYKDMEV 829
                            ||||||||12||||||||22||||||||32||||||||57||||||||67||||||||77||||||||87|||||||110|||||||122|||||||132|||||||142|||||||152|||||||162|||||||172|||||||200|||||||210|||||||220|||||||230|||||||240|||||||269|||||||279|||||||289|||||||310|||||||355|||||||365|      409       419   ||  432       442       452       462       472       525       535       545       555    || 571       581       591       601       611       621       631       641       651      |712       722       732       742       752       762       772       782       792       802     ||819       829
                            |||||||11-UNK|||20-UNK|||29-UNK|||38-UNK|||62-UNK|||71-UNK|||80-UNK|||89-UNK||111-UNK||122-UNK||131-UNK||140-UNK||149-UNK||158-UNK||167-UNK||176-UNK||203-UNK||212-UNK||221-UNK||230-UNK||239-UNK||248-UNK||276-UNK||285-UNK||294-UNK||314-UNK||358-UNK||||                    423|                                                  480|                                 560|                                                                                        658|                                                                                               808|             
                            3-UNK|||12-UNK|||21-UNK|||30-UNK|||39-UNK|||63-UNK|||72-UNK|||81-UNK|||90-UNK||112-UNK||123-UNK||132-UNK||141-UNK||150-UNK||159-UNK||168-UNK||177-UNK||204-UNK||213-UNK||222-UNK||231-UNK||240-UNK||268-UNK||277-UNK||286-UNK||295-UNK||315-UNK||359-UNK|||                     427                                                   524                                  567                                                                                         710                                                                                                816             
                             4-UNK|| 13-UNK|| 22-UNK|| 31-UNK|| 40-UNK|| 64-UNK|| 73-UNK|| 82-UNK|| 91-UNK||113-UNK||124-UNK||133-UNK||142-UNK||151-UNK||160-UNK||169-UNK||196-UNK||205-UNK||214-UNK||223-UNK||232-UNK||241-UNK||269-UNK||278-UNK||287-UNK||307-UNK||316-UNK||360-UNK||                                                                                                                                                                                                                                                                                                                               
                              5-UNK|  14-UNK|  23-UNK|  32-UNK|  56-UNK|  65-UNK|  74-UNK|  83-UNK|  92-UNK| 114-UNK| 125-UNK| 134-UNK| 143-UNK| 152-UNK| 161-UNK| 170-UNK| 197-UNK| 206-UNK| 215-UNK| 224-UNK| 233-UNK| 242-UNK| 270-UNK| 279-UNK| 288-UNK| 308-UNK| 317-UNK| 361-UNK|                                                                                                                                                                                                                                                                                                                               
                               6-UNK   15-UNK   24-UNK   33-UNK   57-UNK   66-UNK   75-UNK   84-UNK   93-UNK  117-UNK  126-UNK  135-UNK  144-UNK  153-UNK  162-UNK  171-UNK  198-UNK  207-UNK  216-UNK  225-UNK  234-UNK  243-UNK  271-UNK  280-UNK  289-UNK  309-UNK  353-UNK  362-UNK                                                                                                                                                                                                                                                                                                                               
                                7-UNK   16-UNK   25-UNK   34-UNK   58-UNK   67-UNK   76-UNK   85-UNK   94-UNK  118-UNK  127-UNK  136-UNK  145-UNK  154-UNK  163-UNK  172-UNK  199-UNK  208-UNK  217-UNK  226-UNK  235-UNK  244-UNK  272-UNK  281-UNK  290-UNK  310-UNK  354-UNK  363-UNK                                                                                                                                                                                                                                                                                                                              
                                 8-UNK   17-UNK   26-UNK   35-UNK   59-UNK   68-UNK   77-UNK   86-UNK   95-UNK  119-UNK  128-UNK  137-UNK  146-UNK  155-UNK  164-UNK  173-UNK  200-UNK  209-UNK  218-UNK  227-UNK  236-UNK  245-UNK  273-UNK  282-UNK  291-UNK  311-UNK  355-UNK  364-UNK                                                                                                                                                                                                                                                                                                                             
                                  9-UNK   18-UNK   27-UNK   36-UNK   60-UNK   69-UNK   78-UNK   87-UNK   96-UNK  120-UNK  129-UNK  138-UNK  147-UNK  156-UNK  165-UNK  174-UNK  201-UNK  210-UNK  219-UNK  228-UNK  237-UNK  246-UNK  274-UNK  283-UNK  292-UNK  312-UNK  356-UNK  365-UNK                                                                                                                                                                                                                                                                                                                            
                                  10-UNK   19-UNK   28-UNK   37-UNK   61-UNK   70-UNK   79-UNK   88-UNK  110-UNK  121-UNK  130-UNK  139-UNK  148-UNK  157-UNK  166-UNK  175-UNK  202-UNK  211-UNK  220-UNK  229-UNK  238-UNK  247-UNK  275-UNK  284-UNK  293-UNK  313-UNK  357-UNK  400                                                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 B   1 MNKESKDDDMSLGKFSFSHFLYYVYGLYKLFTGHGSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIVFSSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISFVKILVIEIFGSILGLLGLIVGLLMAGKASEFQ 213
                                    10        20  ||    37        47        57        67        77        87        97       107       117     ||139       149       159       169   ||  186       196       206       
                                                 23|                                                                                         123|                                  173|                                
                                                  31                                                                                          136                                   181                                


Chain D from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 D  17 FFGFAGCAAAMVLSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSPTEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTRGS 163
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       


Chain E from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 E   9 APFFGAIGCASAIIFTSLGAAYGTAKSGVLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    18        28        50        60        70        80        90       100       110       120       130       140       150        
                                                       37|                                                                                                            
                                                        50                                                                                                            


Chain F from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 F   9 APFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain G from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 G  10 PFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149         


Chain H from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 H   9 APFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain I from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 I   9 APFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain J from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tj5 J   9 APFFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158


Chain L from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 5tj5 L   5 YTVVGVFIVVSAMSVLFWIMAPKNNQAVWRSTVILTLAMMFLMWAITFLCQLHPLVA  61
                                    14        24        34        44        54       


Chain M from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 M  11 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain N from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 N  11 FFGAIGCASAIIFTSLGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQALYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRATQDV 158
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain O from PDB  Type:PROTEIN  Length:54
                                                                                      
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 5tj5 O   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 100
                            ||||||||10||||||||20||||||||30||||||||86||||||||96||||
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Chain P from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh...hhhhh.........hhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tj5 P   4 VYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSSESLTTSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITLQRCHPLGWFDTLPTxxxxxxxxxxxxxxxxxxxxNIEIIRNKLYKAYLEDFYNFVTEEIPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNY 341
                                    13        23        33        43        53        63        73        83        93       103       122       132   ||||149|||||||159|||||  181       191       201|||||||213|||||||223|||||||241|||||||256||     292       302       312       322       332         
                                                                                                                                      112|           136||||||152-UNK||161-UNK                     201||||||212-UNK||221-UNK||238-UNK||252-UNK||                                                         
                                                                                                                                       122            144-UNK||153-UNK||162-UNK                     204-UNK||213-UNK||222-UNK||239-UNK||253-UNK|                                                         
                                                                                                                                                       145-UNK||154-UNK||163-UNK                     205-UNK||214-UNK||223-UNK||240-UNK||254-UNK                                                         
                                                                                                                                                        146-UNK| 155-UNK| 176                         206-UNK| 215-UNK| 224-UNK| 241-UNK| 255-UNK                                                        
                                                                                                                                                         147-UNK  156-UNK                              207-UNK  216-UNK  225-UNK  242-UNK  256-UNK                                                       
                                                                                                                                                          148-UNK  157-UNK                              208-UNK  217-UNK  226-UNK  248-UNK  257-UNK                                                      
                                                                                                                                                           149-UNK  158-UNK                              209-UNK  218-UNK  227-UNK  249-UNK  284                                                         
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                                                                                                                                                             151-UNK  160-UNK                              211-UNK  220-UNK  237-UNK  251-UNK
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TJ5)

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(no "CATH Domain" information available for 5TJ5)

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(-) Gene Ontology  (34, 104)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VA0D_YEAST | P32366: 3j9t 3j9u 3j9v 5vox 5voy 5voz
        VA0E_YEAST | Q3E7B6: 5vox 5voy 5voz
        VATL1_YEAST | P25515: 3j9t 3j9u 3j9v 5vox 5voy 5voz
        VATL2_YEAST | P32842: 5vox 5voy 5voz
        VATO_YEAST | P23968: 5vox 5voy 5voz
        VPH1_YEAST | P32563: 2jtw 2nvj 2rpw 3j9t 3j9u 3j9v 5i1m 5vox 5voy 5voz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5TJ5)