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(-) Description

Title :  STRUCTURE OF A PEPTIDE DERIVED FROM H+-V-ATPASE SUBUNIT A
 
Authors :  L. S. Vermeer, V. Reat, M. A. Hemminga, A. Milon
Date :  08 Nov 08  (Deposition) - 24 Mar 09  (Release) - 05 May 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  X  (20x)
NMR Structure *:  X  (1x)
Keywords :  V-Atpase Subunit A, Peptide, Acetylation, Coiled Coil, Glycoprotein, Hydrogen Ion Transport, Ion Transport, Membrane, Phosphoprotein, Transmembrane, Transport, Vacuole, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. S. Vermeer, V. Reat, M. A. Hemminga, A. Milon
Structural Properties Of A Peptide Derived From H(+)-V-Atpase Subunit A
Biochim. Biophys. Acta V. 1788 1204 2009
PubMed-ID: 19249284  |  Reference-DOI: 10.1016/J.BBAMEM.2009.02.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 25 MERIC PEPTIDE FROM V-TYPE PROTON ATPASE SUBUNIT A, VACUOLAR ISOFORM
    ChainsX
    EngineeredYES
    FragmentTM7, UNP RESIDUES 728-748
    Other DetailsTHE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE OCCURS NATURALLY IN THE YEAST.
    SynonymKMTM7, V-ATPASE A 1 SUBUNIT, VACUOLAR PROTON TRANSLOCATING ATPASE SUBUNIT A 1, VACUOLAR PROTON PUMP A SUBUNIT, V-ATPASE 95 KDA SUBUNIT, VACUOLAR PH PROTEIN 1
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)X
NMR Structure * (1x)X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2RPW)

(-) Sites  (0, 0)

(no "Site" information available for 2RPW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RPW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RPW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RPW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RPW)

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YOR270C1YOR270C.1XV:830573-8280512523VPH1_YEAST1-8408401X:1-25 (gaps)89

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain X from PDB  Type:PROTEIN  Length:25
 aligned with VPH1_YEAST | P32563 from UniProtKB/Swiss-Prot  Length:840

    Alignment length:89
                                   671       681       691       701       711       721       731       741         
           VPH1_YEAST   662 KKSHEPLPSTEADASSEDLEAQQLISAMDADDAEEEEVGSGSHGEDFGDIMIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVL 750
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..----------------------------------------------------------------........hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: X:1-25 (gaps) UniProt: 1-840 [INCOMPLETE]                                  Transcript 1
                 2rpw X   1 KK----------------------------------------------------------------SHTASYLRLWALSLAHAQLSSKK  25
                             |       -         -         -         -         -         -      |  6        16         
                             2                                                                3                      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RPW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RPW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RPW)

(-) Gene Ontology  (22, 22)

NMR Structure(hide GO term definitions)
Chain X   (VPH1_YEAST | P32563)
molecular function
    GO:0051117    ATPase binding    Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0016049    cell growth    The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006797    polyphosphate metabolic process    The chemical reactions and pathways involving a polyphosphate, the anion or salt of polyphosphoric acid.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0007035    vacuolar acidification    Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion.
    GO:0070072    vacuolar proton-transporting V-type ATPase complex assembly    The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane.
cellular component
    GO:0000324    fungal-type vacuole    A vacuole that has both lytic and storage functions. The fungal vacuole is a large, membrane-bounded organelle that functions as a reservoir for the storage of small molecules (including polyphosphate, amino acids, several divalent cations (e.g. calcium), other ions, and other small molecules) as well as being the primary compartment for degradation. It is an acidic compartment, containing an ensemble of acid hydrolases. At least in S. cerevisiae, there are indications that the morphology of the vacuole is variable and correlated with the cell cycle, with logarithmically growing cells having a multilobed, reticulated vacuole, while stationary phase cells contain a single large structure.
    GO:0000329    fungal-type vacuole membrane    The lipid bilayer surrounding a vacuole, the shape of which correlates with cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this structure is found in Saccharomyces cerevisiae.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0033179    proton-transporting V-type ATPase, V0 domain    A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring.
    GO:0005774    vacuolar membrane    The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
    GO:0000220    vacuolar proton-transporting V-type ATPase, V0 domain    The V0 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
    GO:0005773    vacuole    A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VPH1_YEAST | P325632jtw 2nvj 3j9t 3j9u 3j9v 5i1m 5tj5 5vox 5voy 5voz

(-) Related Entries Specified in the PDB File

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