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(-) Description

Title :  STRUCTURAL BASIS FOR INHIBITION OF ERYTHROCYTE INVASION BY ANTIBODIES TO PLASMODIUM FALCIPARUM PROTEIN CYRPA
 
Authors :  L. Chen, Y. Xu, W. Wang, J. K. Thompson, E. Goddard-Borger, M. C. Lawrenc A. F. Cowman
Date :  03 Oct 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.09
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Plasmodium Falciparum Cyrpa Inhibitory Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, Y. Xu, W. Wong, J. K. Thompson, J. Healer, E. Goddard-Borger, M. C. Lawrence, A. F. Cowman
Structural Basis For Inhibition Of Erythrocyte Invasion By Antibodies To Plasmodium Falciparum Protein Cyrpa.
Elife V. 6 2017
PubMed-ID: 28195530  |  Reference-DOI: 10.7554/ELIFE.21347

(-) Compounds

Molecule 1 - CYSTEINE-RICH PROTECTIVE ANTIGEN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 30-362
    Gene: PF3D7_0423800
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TIK)

(-) Sites  (0, 0)

(no "Site" information available for 5TIK)

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:19 -A:35
2A:90 -A:104
3A:151 -A:169
4A:229 -A:239
5A:274 -A:298
6B:19 -B:35
7B:90 -B:104
8B:151 -B:169
9B:229 -B:239
10B:274 -B:298
11C:19 -C:35
12C:90 -C:104
13C:151 -C:169
14C:229 -C:239
15C:274 -C:298
16D:19 -D:35
17D:90 -D:104
18D:151 -D:169
19D:229 -D:239
20D:274 -D:298

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TIK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TIK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TIK)

(-) Exons   (0, 0)

(no "Exon" information available for 5TIK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.......eeeee....eeeeeee...eeeeeeee..eeeeeee.hhhh......eeeeee....eeeeee.....eeeeeeee.........eeee............eee..eee..eeeeeeeee...........eeeeee........eeeeeee............eeeee..eeeeeeeeee....eeeeeeeeeee....eeeeee........eeeeeeee..eeeeeee.......eeeee...eeeee.......eeee....eeeeee.....eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tik A   1 SRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANY 332
                                    10        20        30       |46        56        66        76        86     ||102       112       122       132       142       152       164       174       184       194       204       214       224       234       244       254       264       274       284   ||  302       312       322       332
                                                                38|                                             92|                                                           161|                                                                                                                         288|                                   
                                                                 45                                              99                                                            164                                                                                                                          297                                   


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.........eee....eeeeeee.....eeeeeeee..eeeeeee.hhhh......eeeeee....eeeeee..........eeeeeeee......eeeeeee............eee..ee....eeeeeeee.............eeeeee........eeeeeee........eeeeeeeee..eeeeeeeeee....eeeeeeeeeee....eeeeee........eeeeeeee..eeeeeee.......eeeee...eeeee............eeee....eeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tik B   1 SRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEFSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKTAAGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANY 332
                                    10        20        30        44        54        64        74        84        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    || 298       308       318       328    
                                                                 39|                                               93|                                                                                                                                                                                                290|                                      
                                                                  44                                                95                                                                                                                                                                                                 294                                      


Chain C from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.........eee....eeeeeee.....eeeeeeee..eeeeeee.hhhh.....eeeeeee....eeeeeee.......eeeeeeee......eeeeeee............eee..eee..eeeeeeeee.............eeeeee........eeeeee.........eeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee..eeeeee........eeeeeeee..eeeeeee.......eeeee...eeeee..........eeee....eeeeee.....eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tik C   1 SRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDEDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEEFKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKAGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYE 333
                                    10        20        30       |44        54        64        74        84        94||     107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287  ||   302       312       322       332 
                                                                38|                                                  95|                                                                                                                                                                                            290|                                     
                                                                 43                                                   99                                                                                                                                                                                             296                                     


Chain D from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.......eeeeee..eeeeeeee...eeeeeeee..eeeeeeehhhhh......eeeeee....eeeeee........eeeeeeee......eeeeeee............eee..eee..eeeeeeeee.............eeeeee........eeeeeee........eeeeeeeee..eeeeeeeeee....eeeeeeeeeee....eeeeeee.......eeeeeeee..eeeeeee.......eeeee...eeeee........eeeeee..eeeeeeeee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tik D   0 TSRHVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLTHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDSNRKKDMTCHRFYSNDGKEYNNAEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFKDDNKKDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEGCYGGTFVKIDENRALFIYSSSQGIYNIHTIYYANYE 333
                                     9        19        29        39|       55        65        75        85      ||98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288||     305       315       325        
                                                                  39|                                            92|                                                                                                                                                                                              289|                                    
                                                                   46                                             96                                                                                                                                                                                               297
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TIK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TIK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TIK)

(-) Gene Ontology  (5, 5)

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 Related Entries

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UniProtKB/TrEMBL
        Q8IFM8_PLAF7 | Q8IFM8: 5ezn 5ezo 5tih

(-) Related Entries Specified in the PDB File

5tih