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(-) Description

Title :  CRYSTAL STRUCTURE OF PFCYRPA
 
Authors :  P. Favuzza, G. Pluschke, M. G. Rudolph
Date :  26 Nov 15  (Deposition) - 07 Dec 16  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym. Unit :  A,B,E,G
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,G  (1x)
Keywords :  Malaria Inhibitory Antibody, Fab, Immune System, Cyrpa (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Favuzza, E. Guffart, M. Tamborrini, B. Scherer, A. M. Dreyer, A. C. Rufer, J. Erny, J. Hoernschemeyer, R. Thoma, G. Schmid, B. Gsell, A. Lamelas, J. Benz, C. Joseph, H. Matile, G. Pluschke, M. G. Rudolph
Structure Of The Malaria Vaccine Candidate Antigen Cyrpa An Its Complex With A Parasite Invasion Inhibitory Antibody.
Elife V. 6 2017
PubMed-ID: 28195038  |  Reference-DOI: 10.7554/ELIFE.20383

(-) Compounds

Molecule 1 - CYSTEINE-RICH PROTECTIVE ANTIGEN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: PF3D7_0423800
    Organism Scientific: PLASMODIUM FALCIPARUM (ISOLATE 3D7)
    Organism Taxid: 36329
    Strain: ISOLATE 3D7
 
Molecule 2 - CYSTEINE-RICH PROTECTIVE ANTIGEN
    Chains: E
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: PF3D7_0423800
    Organism Scientific: PLASMODIUM FALCIPARUM (ISOLATE 3D7)
    Organism Taxid: 36329
    Strain: ISOLATE 3D7
 
Molecule 3 - CYSTEINE-RICH PROTECTIVE ANTIGEN
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: PF3D7_0423800
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7
 
Molecule 4 - CYSTEINE-RICH PROTECTIVE ANTIGEN
    Chains: G
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: PF3D7_0423800
    Organism Scientific: PLASMODIUM FALCIPARUM (ISOLATE 3D7)
    Organism Taxid: 36329
    Strain: ISOLATE 3D7

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABEG
Biological Unit 1 (1x): A E 
Biological Unit 2 (1x):  B G

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EZN)

(-) Sites  (0, 0)

(no "Site" information available for 5EZN)

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:48 -A:64
2A:119 -A:133
3A:180 -E:198
4B:48 -B:64
5B:119 -B:133
6B:180 -G:198
7E:258 -E:268
8E:303 -E:327
9G:258 -G:268
10G:303 -G:327

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EZN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EZN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EZN)

(-) Exons   (0, 0)

(no "Exon" information available for 5EZN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.........eeee..eeeeeeee....eeeeeeee..eeeeeee...........eeeeee....eeeeee.......eeeeeeee..........eee............eee..ee....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ezn A  32 HVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDEEKKDMTCHRFYSNDGKEYQNSEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYKFK 188
                                    41        51        61     || 76        86        96       106       116      |130       140       150       160       170       180        
                                                              67|                                               123|                                                            
                                                               73                                                128                                                            


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.........eeee..eeeeeeee.........eeeeeeee..eeeeeee.hhhh......eeeeee....eeeeee.........eeeeeeee......eeeeeee............eee..ee....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ezn B  32 HVFIRTELSFIKNNVPCIRDMFFIYKRELYNICLDDLKGEEDETHIYVQKKVKDSWITLNDLFKETDLTGRPHIFAYVDVEEIIILLCEDDENRKKDMTCHRFYSNDGKEYQNSEITISDYILKDKLLSSYVSLPLKIENREYFLICGVSPYK 192
                                    41        51        61        71        81        91       101       111       121 ||    133       143       153       163       173       183 ||
                                                                                                                     123|                                                        185|
                                                                                                                      126                                                         192


Chain E from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeeee.........eeeeeeeee..eeeeeeee........eeeeeeeee....eeeeee........eeeeeee....eeeeee.......eeeee...eeeee...............eeee....eeeeee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ezn E 193 KDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKYGQTTAGCYGGTFVKIDEQRTLFIYSSSQGIYNIHTIYYANYE 362
                                   202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362


Chain G from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeeee........eeeeeeeeee..eeeeeeeee.......eeeeeeeeeee..eeeeee........eeeeeeee..eeeeeee.......eeeee...eeeee...........eeee....eeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ezn G 193 KDDILCMASHDKGETWGTKIVIKYDNYKLGVQYFFLRPYISKNDLSFHFYVGDNINNVKNVNFIECTHEKDLEFVCSNRDFLKDNKVLQDVSTLNDEYIVSYGNDNNFAECYIFFNNENSILIKPEKTAGCYGGTFVKIDEQRTLFIYSSSQGIYNIHTIYYANYE 362
                                   202       212       222       232       242       252       262       272       282       292       302       312      |326       336       346       356      
                                                                                                                                                        319|                                      
                                                                                                                                                         324
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EZN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EZN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EZN)

(-) Gene Ontology  (5, 5)

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 Related Entries

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        Q8IFM8_PLAF7 | Q8IFM8: 5ezo 5tih 5tik

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