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(-) Description

Title :  A FRAGMENT OF A HUMAN TRNA SYNTHETASE
 
Authors :  L. Sun, P. Schimmel
Date :  02 Sep 16  (Deposition) - 30 Nov 16  (Release) - 04 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Trna Synthetase, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sun, Y. Song, D. Blocquel, X. L. Yang, P. Schimmel
Two Crystal Structures Reveal Design For Repurposing The C-Ala Domain Of Human Alars.
Proc. Natl. Acad. Sci. V. 113 14300 2016 U. S. A.
PubMed-ID: 27911835  |  Reference-DOI: 10.1073/PNAS.1617316113

(-) Compounds

Molecule 1 - ALANINE--TRNA LIGASE, CYTOPLASMIC
    Chains: A
    EC Number: 6.1.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid: 1182032
    Fragment: UNP RESIDUES 757-965
    Gene: AARS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALANYL-TRNA SYNTHETASE, ALARS, RENAL CARCINOMA ANTIGEN NY- REN-42

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5T76)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T76)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T76)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T76)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T76)

(-) Exons   (0, 0)

(no "Exon" information available for 5T76)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeee.hhhhhhhh.hhhhhhhhhhh...eeeee...eeeeee.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t76 A   2 AEAQKALRKAESLKKCLSVmEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVmDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEmESGATAKALNEALKLFKmHSPQTSAmLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSGLmDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQLRLGD 209
                                    11        21        31        41        51        61        71        81        91       101    |  111       121  |    131|      141       151       161       171       181       191       201        
                                              21-MSE                                           70-MSE                             106-MSE           124-MSE 132-MSE                                171-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T76)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T76)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T76)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t76
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYAC_HUMAN | P49588: 4xem 4xeo 5knn 5t5s

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5T76)