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(-) Description

Title :  CRYSTAL STRUCTURE OF WILD TYPE HUMAN ALARS CATALYTIC DOMAIN
 
Authors :  H. Zhou, W. He, X. L. Yang
Date :  24 Dec 14  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Trna Synthetase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhou, X. L. Yang
Crystal Structure Of Wild Type Human Alars Catalytic Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALANINE--TRNA LIGASE, CYTOPLASMIC
    Chains: A
    EC Number: 6.1.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN
    Gene: AARS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALANYL-TRNA SYNTHETASE,ALARS,RENAL CARCINOMA ANTIGEN NY-REN- 42

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1A5A1Ligand/Ion'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE
2EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:44 , ARG A:77 , TYR A:93 , HIS A:94 , HIS A:95 , PHE A:98 , MET A:100 , TRP A:176 , GLU A:189 , GLU A:213 , ILE A:214 , ASN A:216 , VAL A:218 , ASP A:239 , THR A:240 , GLY A:241 , GLY A:243 , ARG A:246 , EDO A:503 , HOH A:702 , HOH A:711 , HOH A:790 , HOH A:953binding site for residue A5A A 501
2AC2SOFTWAREHIS A:336 , ALA A:341 , SER A:342 , ARG A:343 , LEU A:383 , HOH A:759binding site for residue EDO A 502
3AC3SOFTWAREGLU A:189 , A5A A:501 , HOH A:837 , HOH A:953 , HOH A:1087 , HOH A:1088binding site for residue EDO A 503
4AC4SOFTWAREMET A:171 , ARG A:224 , ASN A:317 , TYR A:322 , HOH A:602 , HOH A:629binding site for residue EDO A 504
5AC5SOFTWAREPHE A:267 , PRO A:278 , TYR A:279 , TYR A:295 , HOH A:620 , HOH A:681 , HOH A:908binding site for residue EDO A 505
6AC6SOFTWAREGLN A:12 , TYR A:25 , ARG A:277 , HOH A:607 , HOH A:623 , HOH A:666 , HOH A:684binding site for residue EDO A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XEM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XEM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XEM)

(-) Exons   (0, 0)

(no "Exon" information available for 4XEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh..ee..................hhhhhhhhhhh......hhhhhh.eeeeeeeee...hhhhh........eeeeeeeee....hhhhhhhhhhhhhhh....hhh.eeeeee..hhhhh...hhhhhhhhhhh..hhh.eeeehhhhhee.....eeeeeeeeeeee......hhhhh......eeeeeeeeeeeeee.....eeeeeeeeeeeeeehhhhhhhhh...hhhhh..hhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xem A   4 TLTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLK 384
                                    13        23        33        43        53        63        73     || 87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
                                                                                                      79|                                                                                                                                                                                                                                                                                                            
                                                                                                       84
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XEM)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYAC_HUMAN | P49588: 4xeo 5knn 5t5s 5t76

(-) Related Entries Specified in the PDB File

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