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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF MOUSE CRYPTOCHROME 1
 
Authors :  A. K. Michael, S. Tripathi, C. L. Partch
Date :  31 Aug 16  (Deposition) - 08 Feb 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A
Keywords :  Repressor, Transcription, Circadian (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Michael, J. L. Fribourgh, Y. Chelliah, C. R. Sandate, G. L. Hura, D. Schneidman-Duhovny, S. M. Tripathi, J. S. Takahashi, C. L. Partch
Formation Of A Repressive Complex In The Mammalian Circadia Clock Is Mediated By The Secondary Pocket Of Cry1.
Proc. Natl. Acad. Sci. V. 114 1560 2017 U. S. A.
PubMed-ID: 28143926  |  Reference-DOI: 10.1073/PNAS.1615310114

(-) Compounds

Molecule 1 - CRYPTOCHROME-1
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: CRY1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , ARG A:14 , GLU A:99 , HIS A:130 , GLY A:258binding site for residue CL A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T5X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T5X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T5X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T5X)

(-) Exons   (0, 0)

(no "Exon" information available for 5T5X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhheeeeeee...hhhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhh......hhhhhhhhhhh..................hhhhhhh.....................hhhhhhhhhhhhhhhhhh......hhhhhh.....hhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t5x A   3 VNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQL 491
                                    12        22        32    ||  51        61        71        81        91       101       111       121       131       141       151       161||     178       188       198       208       218       228    || 241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491
                                                             37|                                                                                                                162|                                                            233|                                                                                                                                                                                                                                                              
                                                              47                                                                                                                 170                                                             237
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T5X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T5X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T5X)

(-) Gene Ontology  (43, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  5t5x
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  CRY1_MOUSE | P97784
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRY1_MOUSE | P97784: 4ct0 4k0r

(-) Related Entries Specified in the PDB File

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