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(-) Description

Title :  MAEDI-VISNA VIRUS (MVV) INTEGRASE CCD-CTD (RESIDUES 60-275)
 
Authors :  N. J. Cook, V. E. Pye, P. Cherepanov
Date :  25 Aug 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Visna Virus Integrase, Catalytic Core Domain, C-Terminal Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ballandras-Colas, D. P. Maskell, E. Serrao, J. Locke, P. Swuec, S. R. Jonsson, A. Kotecha, N. J. Cook, V. E. Pye, I. A. Taylor, V. Andresdottir, A. N. Engelman, A. Costa, P. Cherepanov
A Supramolecular Assembly Mediates Lentiviral Dna Integration.
Science V. 355 93 2017
PubMed-ID: 28059770  |  Reference-DOI: 10.1126/SCIENCE.AAH7002

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: MVV
    Organism Scientific: VISNA/MAEDI VIRUS
    Organism Taxid: 11741

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:97 , PHE A:171 , ASN A:172 , ALA A:173 , SER A:176 , HOH A:419binding site for residue ACT A 301
2AC2SOFTWAREHIS A:69 , TYR A:70 , GLU A:71 , LYS A:161binding site for residue ACT A 302
3AC3SOFTWARELYS A:270 , PRO A:274 , PRO A:275binding site for residue ACT A 303
4AC4SOFTWARETYR A:134 , ILE A:183 , LYS A:188 , HOH A:402binding site for residue MES A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T3A)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:239 -Pro A:240

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T3A)

(-) Exons   (0, 0)

(no "Exon" information available for 5T3A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..eeee..ee..ee...eeeee..ee...eeeee......eeeee...eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t3a A  60 IDHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFRVQTMKWYAMFAPKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAGTLITLNIKRKGGLGTSPMDIFIFNKEQQRIQQQSKSIRFCYYRTRKRGHPGEWQGPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPP 275
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      |223       233       243       253       263       273  
                                                                                                                                                                                      216|                                                      
                                                                                                                                                                                       221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T3A)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)

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  5t3a
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_VILVK | P35956: 3hpg 3hph 5llj 5m0q 5m0r

(-) Related Entries Specified in the PDB File

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