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(-) Description

Title :  MAEDI-VISNA VIRUS (MVV) INTEGRASE C-TERMINAL DOMAIN (RESIDUES 220-276)
 
Authors :  V. E. Pye, D. P. Maskell, P. Cherepanov
Date :  27 Jul 16  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Integrase, Visna/Maedi Virus, C-Terminal Domain, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ballandras-Colas, D. P. Maskell, E. Serrao, J. Locke, P. Swuec, S. R. Jonsson, A. Kotecha, N. J. Cook, V. E. Pye, I. A. Taylor, V. Andresdottir, A. N. Engelman, A. Costa, P. Cherepanov
A Supramolecular Assembly Mediates Lentiviral Dna Integration.
Science V. 355 93 2017
PubMed-ID: 28059770  |  Reference-DOI: 10.1126/SCIENCE.AAH7002

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A, B
    EC Number: 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23, 2.7.7.-, 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: POL
    Organism Common: MVV
    Organism Scientific: MAEDI VISNA VIRUS (STRAIN KV1772)
    Organism Taxid: 36374
    Strain: KV1772

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:260 , TYR B:261 , HOH B:461binding site for residue CL B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LLJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:239 -Pro A:240
2Gly B:239 -Pro B:240

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LLJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LLJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5LLJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..ee..ee...eeeee..ee...eeeeee....eeeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 5llj A 220 KIRFCYYRTRKRGHPGEWQGPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPPK 276
                                   229       239       249       259       269       


Chain B from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..ee..ee...eeeee..ee...eeeeee....eeeeee...eee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 5llj B 220 KIRFCYYRTRKRGHPGEWQGPTQVLWGGDGAIVVKDRGTDRYLVIANKDVKFIPPPK 276
                                   229       239       249       259       269
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LLJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LLJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LLJ)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_VILVK | P35956: 3hpg 3hph 5m0q 5m0r 5t3a

(-) Related Entries Specified in the PDB File

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