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(-) Description

Title :  INHIBITED STATE STRUCTURE OF YGSY2P
 
Authors :  K. K. Mahalingan, T. D. Hurley
Date :  03 Aug 16  (Deposition) - 14 Jun 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Glycogen Synthase Inhibited State, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. K. Mahalingan, S. Baskaran, A. A. Depaoli-Roach, P. J. Roach, T. D. Hurley
Redox Switch For The Inhibited State Of Yeast Glycogen Synthase Mimics Regulation By Phosphorylation.
Biochemistry V. 56 179 2017
PubMed-ID: 27935293  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00884

(-) Compounds

Molecule 1 - GLYCOGEN [STARCH] SYNTHASE ISOFORM 2
    Chains: A, B
    EC Number: 2.4.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GSY2, YLR258W, L8479.8
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1U5P1Ligand/IonURIDINE-5'-MONOPHOSPHATE
2UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1U5P2Ligand/IonURIDINE-5'-MONOPHOSPHATE
2UDP2Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:319 , ARG A:320 , LYS A:326 , PHE A:480 , LEU A:481 , TYR A:492 , GLY A:512 , TYR A:513 , THR A:514 , GLU A:517binding site for residue UDP A 801
2AC2SOFTWAREGLY B:319 , ARG B:320 , LYS B:326 , PHE B:480 , LEU B:481 , TYR B:492 , TYR B:513 , GLU B:517binding site for residue U5P B 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SUL)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:400 -Pro A:401
2Tyr B:400 -Pro B:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SUL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SUL)

(-) Exons   (0, 0)

(no "Exon" information available for 5SUL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:619
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.........hhhhhhhhhhhhhhhhhh..eeeeee....hhhhheeee...hhhhh...hhhhhhhhhhhhhh...eeeeee......eeeee.hhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhh................hhhhhhh.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhh....ee.....hhhhh...hhhhhhhhhhhhhhhhh......hhh.eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.............eee.....hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhh......hhhh.eeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5sul A   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPLLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271     ||286       296       306       316       326       336       346       356       366       376       386       396    || 420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630         
                                                                                                                                                                                                                                                                                                             277|                                                                                                                   401|                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                              283                                                                                                                    416                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:606
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeee..........hhhhhhhhhhhhhhhhh..eeeeee....hhhhheee....hhhhhhhhhhhhhhhhhhhhhh...eeeeee......eeeee....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.eeee...hhhhhhhhhh.....ee.....hhhhh..hhhhhhhhhhhhhhhhh......hhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....................hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhheeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5sul B   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALRRGYPDQFRELV 626
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271     ||287       297       307       317       327       337       347       357       367       377       387       397   ||  420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620      
                                                                                                                                                                                                                                                                                                             277|                                                                                                                  401|                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                              284                                                                                                                   415
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SUL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SUL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SUL)

(-) Gene Ontology  (7, 7)

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  GYS2_YEAST | P27472
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  2.4.1.11
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 Related Entries

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UniProtKB/Swiss-Prot
        GYS2_YEAST | P27472: 3naz 3nb0 3nch 3o3c 3rsz 3rt1 4kq2 4kqm 5suk

(-) Related Entries Specified in the PDB File

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