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(-) Description

Title :  GLYCOGEN SYNTHASE BASAL STATE UDP COMPLEX
 
Authors :  S. Baskaran, T. D. Hurley
Date :  23 Jul 10  (Deposition) - 06 Oct 10  (Release) - 20 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.51
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Glycogen Synthase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Baskaran, P. J. Roach, A. A. Depaoli-Roach, T. D. Hurley
Structural Basis For Glucose-6-Phosphate Activation Of Glycogen Synthase.
Proc. Natl. Acad. Sci. Usa V. 107 17563 2010
PubMed-ID: 20876143  |  Reference-DOI: 10.1073/PNAS.1006340107

(-) Compounds

Molecule 1 - GLYCOGEN [STARCH] SYNTHASE ISOFORM 2
    Chains: A, B, C, D
    EC Number: 2.4.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: GSY2, YLR258W, L8479.8
    Mutation: YES
    Organism Common: BREWER'S YEAST,LAGER BEER YEAST,YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1SO411Ligand/IonSULFATE ION
2UDP4Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:20 , TYR A:25 , SER A:26 , LYS A:29 , LYS A:275BINDING SITE FOR RESIDUE SO4 A 801
02AC2SOFTWAREARG A:20 , ARG D:427 , ARG D:428BINDING SITE FOR RESIDUE SO4 D 802
03AC3SOFTWAREGLN A:582 , ASN A:585 , ARG A:589BINDING SITE FOR RESIDUE SO4 A 803
04AC4SOFTWAREARG A:320 , LYS A:326 , PHE A:480 , LEU A:481 , TYR A:492 , GLY A:512 , TYR A:513 , THR A:514 , GLU A:517BINDING SITE FOR RESIDUE UDP A 901
05AC5SOFTWAREARG B:20 , SER B:26 , LYS B:29BINDING SITE FOR RESIDUE SO4 B 801
06AC6SOFTWAREARG B:20 , ARG C:427 , ARG C:428BINDING SITE FOR RESIDUE SO4 C 802
07AC7SOFTWAREASN B:585 , ARG B:589BINDING SITE FOR RESIDUE SO4 B 803
08AC8SOFTWAREARG B:320 , LYS B:326 , PHE B:480 , LEU B:481 , TYR B:492 , GLY B:512 , TYR B:513 , THR B:514 , GLU B:517BINDING SITE FOR RESIDUE UDP B 901
09AC9SOFTWAREARG C:20 , SER C:26 , LYS C:29BINDING SITE FOR RESIDUE SO4 C 801
10BC1SOFTWAREARG B:427 , ARG B:428 , ARG C:20BINDING SITE FOR RESIDUE SO4 B 802
11BC2SOFTWAREASN C:585 , ARG C:589BINDING SITE FOR RESIDUE SO4 C 803
12BC3SOFTWAREGLY C:319 , ARG C:320 , LYS C:326 , VAL C:356 , PHE C:480 , LEU C:481 , TYR C:492 , GLY C:512 , TYR C:513 , THR C:514 , GLU C:517BINDING SITE FOR RESIDUE UDP C 901
13BC4SOFTWAREARG D:20 , SER D:26 , LYS D:29 , LYS D:275BINDING SITE FOR RESIDUE SO4 D 801
14BC5SOFTWAREGLN D:582 , ASN D:585 , ARG D:589BINDING SITE FOR RESIDUE SO4 D 803
15BC6SOFTWAREARG D:320 , LYS D:326 , PHE D:480 , LEU D:481 , TYR D:492 , GLY D:512 , TYR D:513 , THR D:514 , GLU D:517BINDING SITE FOR RESIDUE UDP D 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O3C)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:400 -Pro A:401
2Tyr B:400 -Pro B:401
3Tyr C:400 -Pro C:401
4Tyr D:400 -Pro D:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O3C)

(-) Exons   (0, 0)

(no "Exon" information available for 3O3C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:611
 aligned with GYS2_YEAST | P27472 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:638
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           GYS2_YEAST     2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGAYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee........hhhhhhhhhhhhhhhhhh..eeeeee....hhhhheee....hhhhh...hhhhhhhhhhhhhh...eeeeee......eeeee.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhhh..--...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhh....ee.....hhhhh.-------hhhhhhhhhhhhhhhhh......hhh.eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------...hhhhhhhhhhhhhh.............eee.....hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhhh-----hhhh.eeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3c A   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASG--DFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQ-------LHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYP-------------ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDL-----AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   |  |211       221       231       241       251       261       271     |   -   |   291       301       311       321       331       341       351       361       371       381       391       401         -   |   421       431       441       451       461       471       481       491       501       511       521       531        |-    |  551       561       571       581       591       601       611       621       631        
                                                                                                                                                                                                                                     205  |                                                                  277     285                                                                                                                 401           415                                                                                                                          540   546                                                                                             
                                                                                                                                                                                                                                        208                                                                                                                                                                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:611
 aligned with GYS2_YEAST | P27472 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:638
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           GYS2_YEAST     2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGAYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee........hhhhhhhhhhhhhhhhhh..eeeeee....hhhhheee....hhhhh...hhhhhhhhhhhhhh...eeeeee......eeeee.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhhh..--...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhh....ee.....hhhhh.-------hhhhhhhhhhhhhhhhh......hhh.eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------...hhhhhhhhhhhhhh.............eee.....hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhhh-----hhhh.eeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3c B   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASG--DFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQ-------LHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYP-------------ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDL-----AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   |  |211       221       231       241       251       261       271     |   -   |   291       301       311       321       331       341       351       361       371       381       391       401         -   |   421       431       441       451       461       471       481       491       501       511       521       531        |-    |  551       561       571       581       591       601       611       621       631        
                                                                                                                                                                                                                                     205  |                                                                  277     285                                                                                                                 401           415                                                                                                                          540   546                                                                                             
                                                                                                                                                                                                                                        208                                                                                                                                                                                                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:611
 aligned with GYS2_YEAST | P27472 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:638
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           GYS2_YEAST     2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGAYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee........hhhhhhhhhhhhhhhhhh..eeeeee....hhhhheee....hhhhhhhhhhhhhhhhhhhhhh...eeeeee......eeeee.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhhh..--...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhh....ee.....hhhhh.-------hhhhhhhhhhhhhhhhh......hhh.eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------...hhhhhhhhhhhhhh.............eee.....hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhhh-----hhhh.eeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3c C   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASG--DFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQ-------LHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYP-------------ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDL-----AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   |  |211       221       231       241       251       261       271     |   -   |   291       301       311       321       331       341       351       361       371       381       391       401         -   |   421       431       441       451       461       471       481       491       501       511       521       531        |-    |  551       561       571       581       591       601       611       621       631        
                                                                                                                                                                                                                                     205  |                                                                  277     285                                                                                                                 401           415                                                                                                                          540   546                                                                                             
                                                                                                                                                                                                                                        208                                                                                                                                                                                                                                                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:611
 aligned with GYS2_YEAST | P27472 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:638
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631        
           GYS2_YEAST     2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGAYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------Glycogen_syn-3o3cD01 D:12-639                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (1)
           Pfam domains (2) ----------Glycogen_syn-3o3cD02 D:12-639                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (2)
           Pfam domains (3) ----------Glycogen_syn-3o3cD03 D:12-639                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (3)
           Pfam domains (4) ----------Glycogen_syn-3o3cD04 D:12-639                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (4)
         Sec.struct. author ..eeeeeeeeeee........hhhhhhhhhhhhhhhhhh..eeeeee....hhhhheee....hhhhh...hhhhhhhhhhhhhh...eeeeee......eeeee.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhhh..--...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhh....ee.....hhhhh.-------hhhhhhhhhhhhhhhhh......hhh.eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------...hhhhhhhhhhhhhh.............eee.....hhhhhhhhhh.........eeeee..............hhhhhhhhh.eee........hhhhhhhhhh...eeee..hhhhhhhhhh-----hhhh.eeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o3c D   2 SRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASG--DFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQ-------LHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYP-------------ELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDL-----AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALA 639
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   |  |211       221       231       241       251       261       271     |   -   |   291       301       311       321       331       341       351       361       371       381       391       401         -   |   421       431       441       451       461       471       481       491       501       511       521       531        |-    |  551       561       571       581       591       601       611       621       631        
                                                                                                                                                                                                                                     205  |                                                                  277     285                                                                                                                 401           415                                                                                                                          540   546                                                                                             
                                                                                                                                                                                                                                        208
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O3C)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: GT-B (132)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (GYS2_YEAST | P27472)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004373    glycogen (starch) synthase activity    Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GYS2_YEAST | P27472: 3naz 3nb0 3nch 3rsz 3rt1 4kq2 4kqm 5suk 5sul

(-) Related Entries Specified in the PDB File

1rzu 2bis