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(-) Description

Title :  UNCONVENTIONAL SH3 DOMAIN FROM THE POSTSYNAPTIC DENSITY SCAFFOLD PROTEIN SHANK3
 
Authors :  S. K. Ponna, M. Myllykoski, T. M. Boeckers, P. Kursula
Date :  16 Jun 17  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.87
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Postsynaptic Density, Scaffolding Protein, Sh3 Domain, Non-Canonical Binding Site, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Ponna, M. Myllykoski, T. M. Boeckers, P. Kursula
Structure Of An Unconventional Sh3 Domain From The Postsynaptic Density Protein Shank3 At Ultrahigh Resolution
Biochem. Biophys. Res. 2017 Commun.
PubMed-ID: 28647360  |  Reference-DOI: 10.1016/J.BBRC.2017.06.121

(-) Compounds

Molecule 1 - SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 3
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 470-528
    Gene: SHANK3, PROSAP2
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: SHANK3,PROLINE-RICH SYNAPSE-ASSOCIATED PROTEIN 2,PROSAP2, SPANK-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1BTB-1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:486 , GLU A:488 , GLU A:504 , TRP A:518 , HOH A:701 , HOH A:731 , HOH A:742 , LYS B:513binding site for residue BTB A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5O99)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5O99)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee..................eeeeeee....eeeeee..eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 5o99 A 469 SVPGRKFIAVKAHSPQGEGEIPLHRGEAVKVLSIGEGGFWEGTVKGRTGWFPADCVEEVQ 528
                                   478       488       498       508       518       528


Chain B from PDB  Type:PROTEIN  Length:59
                                                                                           
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..................eeeeeee....eeeeee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 5o99 B 469 SVPGRKFIAVKAHSPQGEGEIPLHRGEAVKVLSIGEGGFWEGTVKGRTGWFPADCVEEV 527
                                   478       488       498       508       518
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O99)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O99)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O99)

(-) Gene Ontology  (53, 53)

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  5o99
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  SHAN3_RAT | Q9JLU4
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 Related Entries

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        SHAN3_RAT | Q9JLU4: 2f3n 2f44 5g4x

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