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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE SHANK3 N-TERMINUS
 
Authors :  T. Zacharchenko, I. Barsukov
Date :  17 May 16  (Deposition) - 25 Jan 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Protein, Shank3, Ras, Integrin. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Lilja, T. Zacharchenko, M. Georgiadou, G. Jacquemet, N. Franceschi, E. Peuhu, H. Hamidi, J. Pouwels, V. Martens, F. H. Nia, M. Beifuss, T. Boeckers, H. J. Kreienkamp, I. L. Barsukov, J. Ivaska
Shank Proteins Limit Integrin Activation By Directly Interacting With Rap1 And R-Ras.
Nat. Cell Biol. V. 19 292 2017
PubMed-ID: 28263956  |  Reference-DOI: 10.1038/NCB3487

(-) Compounds

Molecule 1 - SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 3
    Chains: A
    Fragment: SPN-ARR, RESIDUES 1-348
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: SHANK3, PROLINE-RICH SYNAPSE-ASSOCIATED PROTEIN 2, PROSAP2, SPANK-2, SHANK3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 30)

Asymmetric/Biological Unit (1, 30)
No.NameCountTypeFull Name
1EDO30Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:148 , GLY A:149 , THR A:180 , ARG A:181 , ASP A:182 , HOH A:2108BINDING SITE FOR RESIDUE EDO A 1348
02AC2SOFTWARETRP A:251 , ASN A:280 , SER A:282 , ASN A:284 , HOH A:2254BINDING SITE FOR RESIDUE EDO A 1349
03AC3SOFTWAREPHE A:56 , ARG A:91 , ARG A:94 , ARG A:95 , HOH A:2056 , HOH A:2060BINDING SITE FOR RESIDUE EDO A 1350
04AC4SOFTWAREGLU A:267 , ARG A:305 , HOH A:2189 , HOH A:2192BINDING SITE FOR RESIDUE EDO A 1351
05AC5SOFTWAREPHE A:271 , ARG A:347BINDING SITE FOR RESIDUE EDO A 1352
06AC6SOFTWAREGLN A:279 , VAL A:311 , ARG A:312 , EDO A:1376BINDING SITE FOR RESIDUE EDO A 1353
07AC7SOFTWAREASP A:17 , TYR A:53 , ARG A:91 , TYR A:92 , ARG A:94 , HOH A:2004 , HOH A:2007 , HOH A:2056 , HOH A:2255BINDING SITE FOR RESIDUE EDO A 1354
08AC8SOFTWAREASP A:136 , VAL A:168BINDING SITE FOR RESIDUE EDO A 1355
09AC9SOFTWAREGLN A:158 , LEU A:184 , ARG A:192 , GLN A:193BINDING SITE FOR RESIDUE EDO A 1356
10BC1SOFTWAREPHE A:67 , LEU A:68 , LYS A:93 , HIS A:175 , ASP A:177 , HOH A:2042 , HOH A:2046BINDING SITE FOR RESIDUE EDO A 1357
11BC2SOFTWAREGLN A:252 , ASN A:275 , HOH A:2205BINDING SITE FOR RESIDUE EDO A 1358
12BC3SOFTWAREGLY A:244 , THR A:245 , THR A:246 , HOH A:2150BINDING SITE FOR RESIDUE EDO A 1359
13BC4SOFTWAREGLN A:19 , LEU A:125 , SER A:127BINDING SITE FOR RESIDUE EDO A 1360
14BC5SOFTWARELEU A:85 , ASP A:147 , SER A:148BINDING SITE FOR RESIDUE EDO A 1361
15BC6SOFTWAREARG A:215 , ASP A:247 , EDO A:1367BINDING SITE FOR RESIDUE EDO A 1362
16BC7SOFTWAREASN A:294 , GLY A:327 , PHE A:329 , GLU A:330BINDING SITE FOR RESIDUE EDO A 1363
17BC8SOFTWAREGLU A:234 , LEU A:235 , HIS A:238BINDING SITE FOR RESIDUE EDO A 1364
18BC9SOFTWAREASN A:44 , SER A:46 , PHE A:329 , GLU A:333BINDING SITE FOR RESIDUE EDO A 1365
19CC1SOFTWAREHIS A:262 , VAL A:263 , GLN A:264 , HIS A:265BINDING SITE FOR RESIDUE EDO A 1366
20CC2SOFTWAREASP A:247 , ASN A:249 , TRP A:251 , GLN A:256 , EDO A:1362 , HOH A:2178 , HOH A:2257BINDING SITE FOR RESIDUE EDO A 1367
21CC3SOFTWAREARG A:12 , THR A:21 , LYS A:117 , MET A:120 , ASP A:121 , ASP A:145 , HOH A:2002 , HOH A:2107BINDING SITE FOR RESIDUE EDO A 1368
22CC4SOFTWARETYR A:92 , ARG A:94 , HOH A:2096 , HOH A:2100BINDING SITE FOR RESIDUE EDO A 1369
23CC5SOFTWAREARG A:95 , VAL A:96 , ASN A:171BINDING SITE FOR RESIDUE EDO A 1370
24CC6SOFTWAREASN A:313 , ASN A:315 , GLN A:317 , HOH A:2210 , HOH A:2237BINDING SITE FOR RESIDUE EDO A 1371
25CC7SOFTWARELYS A:167 , ASP A:204 , HOH A:2139BINDING SITE FOR RESIDUE EDO A 1372
26CC8SOFTWAREASP A:210 , LYS A:212 , EDO A:1377BINDING SITE FOR RESIDUE EDO A 1373
27CC9SOFTWARELEU A:47 , GLN A:48 , GLN A:321 , HOH A:2022 , HOH A:2236BINDING SITE FOR RESIDUE EDO A 1374
28DC1SOFTWARELYS A:309 , THR A:318 , PHE A:320 , HOH A:2235BINDING SITE FOR RESIDUE EDO A 1375
29DC2SOFTWAREASN A:308 , ASP A:310 , EDO A:1353BINDING SITE FOR RESIDUE EDO A 1376
30DC3SOFTWARELYS A:36 , GLN A:37 , EDO A:1373 , HOH A:2125BINDING SITE FOR RESIDUE EDO A 1377

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G4X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G4X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G4X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G4X)

(-) Exons   (0, 0)

(no "Exon" information available for 5G4X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeehhhheeeeeee....hhhhhhhhhhhhhh....hhh.eeeee........ee......hhhh.........eeeeee..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhh....hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhh..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g4x A   2 DGPGASAVVVRVGIPDLQQTKCLRLDPTAPVWAAKQRVLCALNHSLQDALNYGLFQPPSRGRAGKFLDEERLLQDYPPNLDTPLPYLEFRYKRRVYAQNLIDDKQFAKLHTKANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGECPLSLAAQLDNATDLLKVLRNGGAHLDFRTRDGLTAVHCATRQRNAGALTTLLDLGASPDYKDSRGLTPLYHSALGGGDALCCELLLHDHAQLGTTDENGWQEIHQACRFGHVQHLEHLLFYGANMGAQNASGNTALHICALYNQESCARVLLFRGANKDVRNYNSQTAFQVAIIAGNFELAEVIKTHKDSDVVPFR 347
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G4X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G4X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G4X)

(-) Gene Ontology  (53, 53)

Asymmetric/Biological Unit(hide GO term definitions)

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        SHAN3_RAT | Q9JLU4: 2f3n 2f44 5o99

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