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(-) Description

Title :  NERA FROM AGROBACTERIUM RADIOBACTER IN COMPLEX WITH 2-PHENYLACRYLIC ACID
 
Authors :  V. Karuppiah, H. S. Toogood, D. Leys, N. S. Scrutton
Date :  15 Feb 17  (Deposition) - 17 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A
Keywords :  Old Yellow Enzyme, Profen, Ene-Reductase, 2-Phenylacrylic Acid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Waller, H. S. Toogood, V. Karuppiah, N. J. W. Rattray, D. J. Mansell, D. Leys, J. M. Gardiner, A. Fryszkowska, S. T. Ahmed, R. Bandichhor, G. P. Reddy, N. S. Scrutton
Structural Insights Into The Ene-Reductase Synthesis Of Profens.
Org. Biomol. Chem. V. 15 4440 2017
PubMed-ID: 28485453  |  Reference-DOI: 10.1039/C7OB00163K

(-) Compounds

Molecule 1 - GTN REDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NERA
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 358

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
18OZ1Ligand/Ion2-PHENYLACRYLIC ACID
2ACT4Ligand/IonACETATE ION
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
4GOL3Ligand/IonGLYCEROL

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:22 , PRO A:23 , LEU A:24 , THR A:25 , GLY A:55 , GLN A:97 , HIS A:178 , ASN A:181 , ARG A:230 , THR A:271 , ASN A:305 , ASN A:306 , GLY A:307 , PHE A:327 , GLY A:328 , LYS A:329 , TYR A:356 , 8OZ A:402 , ACT A:406 , HOH A:528 , HOH A:641 , HOH A:646 , HOH A:655binding site for residue FMN A 401
2AC2SOFTWARETHR A:25 , TRP A:99 , HIS A:178 , ASN A:181 , TYR A:183 , TYR A:356 , FMN A:401 , HOH A:532 , HOH A:661binding site for residue 8OZ A 402
3AC3SOFTWAREARG A:196 , THR A:197 , ASP A:198 , HOH A:504 , HOH A:562 , HOH A:605binding site for residue GOL A 403
4AC4SOFTWAREGLU A:220 , GLY A:223 , ALA A:224 , ASP A:244 , HOH A:521 , HOH A:567 , HOH A:630binding site for residue GOL A 404
5AC5SOFTWARETHR A:123 , LYS A:125 , ASN A:295 , HOH A:502 , HOH A:505 , HOH A:520binding site for residue GOL A 405
6AC6SOFTWARETHR A:271 , GLY A:272 , TYR A:356 , FMN A:401 , HOH A:532 , HOH A:582binding site for residue ACT A 406
7AC7SOFTWAREGLU A:141 , THR A:142 , HOH A:505 , HOH A:608binding site for residue ACT A 407
8AC8SOFTWAREGLU A:220 , GLU A:221 , GLY A:223binding site for residue ACT A 408
9AC9SOFTWAREILE A:150 , GLY A:154 , TYR A:200binding site for residue ACT A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N6G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5N6G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N6G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N6G)

(-) Exons   (0, 0)

(no "Exon" information available for 5N6G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee...eee.......hhhhh.hhhhhhhhhh.....eeeeeeee...............hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhh..ee........eeeee.....eeeee....ee.hhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhh...hhhhhhhhhhhhhh.....eeeee.................hhhhhhhhhhhh....eeeee...hhhhhhhhhhh....eeeehhhhhhh.hhhhhhhhh......hhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n6g A   2 TSLFEPAQAGDIALANRIVMAPLTRNRSPGAIPNNLNATYYEQRATAGLIVTEGTPISQQGQGYADVPGLYKREAIEGWKKITDGVHSAGGKIVAQIWHVGRISHTSLQPHGGQPVAPSAITAKSKTYIINDDGTGAFAETSEPRALTIDDIGLILEDYRSGARAALEAGFDGVEIHAANGYLIEQFLKSSTNQRTDDYGGSIENRARFLLEVVDAVAEEIGAGRTGIRLSPVTPANDIFEADPQPLYNYVVEQLGKRNLAFIHVVEGATGGPRDFKQGDKPFDYASFKAAYRNAGGKGLWIANNGYDRQSAIEAVESGKVDAVAFGKAFIANPDLVRRLKNDAPLNAPNQPTFYGGGAEGYTDYPALA 370
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N6G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N6G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N6G)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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        O31246_RHIRD | O31246: 4jic 4jip 4jiq

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